Clone Read LE_HBa0078K05_T7_19305

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0078K05_T7_19305
Primer
T7
ID from Seq. Facility
LE_HBa_078_K05-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 856 raw
Sequence
>LE_HBa0078K05_T7_19305 (raw untrimmed)
CCGAGGCATCTTTCTCTCGAGCTTCTCGGGAGGGATTTACCTACTTTATCTTGAAGTTCTAGATACCGTAATTACTATCGTAAATGGATTTCTATGCTTG
ATGGACGGACAACAGTCTCTAGTTTCGATCTTGTTTCCGCTTTCGTTCTATCGCATTAATCCACATTCTTTATCCTGCATACTCCTAGCGATATTCCTAT
AACAATTAAAATAGTAATTTTA
TCATTCTAAGCTTACATCGTCTCACTTACATGATTCGCTCTTATCTTATCCGACGAATCCGAAAGATATTGACTGCTT
TAATCAATTGCAACTTCCCGTAACAATTTCAAGCTAAATCGTCTCATCTTAGTTCCCGTCTGTAATAACGGCACACAAATGCTACTCTAATTGTCGGAAC
CTTCTCTTACCCTACCATCCACCCCTACCACACCACTACTTCCTGCCCAGCTTCGTAGGTATGATTTATTATAGCATAGACGCATTACATACAATGAAAT
GAAAGCAGACTAGCCTACGCCTCATGTATCAACTCGACACACATCTGATTTCTAATACCAGCTCACGTCCCCGATACTATGTGATACCAACTAGACGTGC
TGCGCTTCTCCTATGTCCTGACTTAGCCCTTGCCCGTCCTCTCGCCCCCGTCCACGCTCTCTCCCACATCCCCCTCAACTTACCCGACCAGCCTCGCTAC
GTCCTCTCCTCTGCGTTGACGTTGGCTGACAAACCGACACTAAACTCTAACAGCTTCAAGTCACATCCTTACAACAAATCAGAAACCCACGTAATTAACA
CATACACTACACGACGGTTATCCCTGCGCGCCCACTCGCACCCTCACTCCGCCAGC
>LE_HBa0078K05_T7_19305 (trimmed for quality and cloning vector)
TC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.787577
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0078K05
Clone
Clone name
hba-78k5
LE_HBa0078K05
P078K05
Clone type
BAC
Contamination
none
Estimated length
78,294
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found