Clone Read LE_HBa0142J15_SP6_199899

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142J15_SP6_199899
Primer
SP6
ID from Seq. Facility
LE_HBa_142_J15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 800 raw
Sequence
>LE_HBa0142J15_SP6_199899 (raw untrimmed)
ACTCAATTGCCGTCGAGGGTTTTCCCTTTTTTTTCACAAGGGGATGTATGCCTTTATGGCGGGGGTATCGTCGACTTATCGCTCCGTTCGAAAGAACCCT
CTTTTTAATTTCTTCTTCCCGCGACTCTTCCAATTTTTCGTTATACGGAGAGATTGGAATGTGAGACCGAGTCGTTAGACCGGCATCCCACCAACGCTCC
CTCTGCAGAAGTAATAACGGTTCAGCGAAGATAGCACACGGCCGCCTAAGATGGTCTAAAATGTACAAGTCATGATATAGCGAGTGCTCGAGGAAGAAGA
GACGATCTCCGAGATGAACCCCCAACACCCAAACGTTTTTTATCAACACGAAAGCTAAGTTGTGGAGCTGTGGGAGGAGACGGTCTCGCTGCCGAGTCGC
TAAGCATGGTATTGACGATGTGTATATATCACTTGAGACGTCGGACGGCCGAGCACAAGCACGACGCTATGAAACGCACCTCGCGACCGACTACACTAAT
CAGAGCCGCACGATGAGCTATCGACAATCAAACACGTAATATGTTGGTTAAGCTAATCTAATAATAAACTGACATTTATGACGCGAAGACATAAGGAGAG
ATATAACAACTGACATAAATTTGCACACCCTAGAACCACATCGCAAAACAACGATCAACACTCGACAAAAGGACCAACCTAACCAATCACTTCTCCAATT
CTTAGACAGCATAAAAAATGAGAGAGTAAGTATCCTAGAGAACGGGAGTGGCTCCGCATCTACAGAATACAACTGCGACATAAGTACGCGGCTATATCGC

>LE_HBa0142J15_SP6_199899 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142J15
Clone
Clone name
hba-142j15
LE_HBa0142J15
P142J15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found