Clone Read LE_HBa0161B09_T7_201270

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161B09_T7_201270
Primer
T7
ID from Seq. Facility
LE_HBa_161_B09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
533 trimmed for vector and quality, 844 raw
Sequence
>LE_HBa0161B09_T7_201270 (raw untrimmed)
CTCCGGACCCGGGGGAACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAATTTGATCACCATATAGAGGAAGAGTTTTGATCTGGTCAGGGATATCATG
CAGCAGCTGTAAGTTCTTTTCTTTCAAGAAAATCATTACTTGACTCACAATAGCATCCACAACATTTCCTAGCACGAATTCCTCCATGTTTAGCTGCACT
TTGCTGCTAGAACCAGGAAAAAGTAATGTGCATTTAGCAAACCTTTCAGCCATAGAGAAACAATAGAAAGAGAAACGAAGAAGCAAGTATCAACATACAT
ATATTATGGTGGCTCATTGTTGCACTAGCAAATACAAAGAGTCGTTTACAGTAGATTTTAGAAGAAGACTTTAAGTTTTAATGTGTTTGCAGTATTTTGG
GTACTTCTCTCTCTTTTTCTTTGGTGCTCCTGTAAACTGATTCAACACTTTTGGAAAGCCGTTTCTACTGAAATTAAAAATTAATGAGTAACAGCTTCTC
GAGATCGGGATGCAGTGTCCAATCTACACAAATTAATGTAAGCCGCTATAAGGGAAGAGTTGCAGTAAAGGAAAGAACAGTGGTAATTGTTAACTGCTTC
TTTGTAACCATGATATGAAACTACCCTATAAGGTCTTCGAATAAACGGATCGTTACATTTGGTTTCTTGATATCTCATTAGATATTGTCTTCCTACAATT
AAGTGACTGCTAAAATGTAGTTGATAAATTACTCATCTGCGTTAAACGTATCCACTACCAAACTCTTTAACAACGTCCAATTCCACTAGACCTTTTCTTG
TAATTACGTTATCTCCTAATAATATAAGATTACTCCATTTTAAA
>LE_HBa0161B09_T7_201270 (trimmed for quality and cloning vector)
AGCTTAATTTGATCACCATATAGAGGAAGAGTTTTGATCTGGTCAGGGATATCATGCAGCAGCTGTAAGTTCTTTTCTTTCAAGAAAATCATTACTTGAC
TCACAATAGCATCCACAACATTTCCTAGCACGAATTCCTCCATGTTTAGCTGCACTTTGCTGCTAGAACCAGGAAAAAGTAATGTGCATTTAGCAAACCT
TTCAGCCATAGAGAAACAATAGAAAGAGAAACGAAGAAGCAAGTATCAACATACATATATTATGGTGGCTCATTGTTGCACTAGCAAATACAAAGAGTCG
TTTACAGTAGATTTTAGAAGAAGACTTTAAGTTTTAATGTGTTTGCAGTATTTTGGGTACTTCTCTCTCTTTTTCTTTGGTGCTCCTGTAAACTGATTCA
ACACTTTTGGAAAGCCGTTTCTACTGAAATTAAAAATTAATGAGTAACAGCTTCTCGAGATCGGGATGCAGTGTCCAATCTACACAAATTAATGTAAGCC
GCTATAAGGGAAGAGTTGCAGTAAAGGAAAGAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955917
Expected error %
0.480626
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF25812.1| Score 104 E Value 1e-21 Identity 33.30% Align. Length 155bp (29.08%) Frame 1
phytochrome E [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
sp|P55004|PHYE_IPONI Score 90 E Value 3e-17 Identity 26.40% Align. Length 158bp (29.64%) Frame 1
Phytochrome E gb|AAA84970.1| phytochrome E
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161B09
Clone
Clone name
hba-161b9
LE_HBa0161B09
C02HBa0161B09
P161B09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found