Clone Read LE_HBa0161B22_SP6_201295

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161B22_SP6_201295
Primer
SP6
ID from Seq. Facility
LE_HBa_161_B22-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 645 raw
Sequence
>LE_HBa0161B22_SP6_201295 (raw untrimmed)
ATATTTCTAGGATTTGTACTGTCCGGGGTCCTTTAGAGGGGCGCCTAGATCACGAACGAAACAAGGGGATCACTCACGCGATACCGGGAATTCCTGACTT
TAGCACAGGTGCTTCACAAACCTATACTGTAGGTCGGCATCGAAAACGCTGGATCACTCTCATAAAGAGTTCGATAAATTACTTTAGAGCCCCCACTGGA
TTATGTTAAGCTATGCGGAGATCGTGTTATGGATGTCTCTGGGGAATATGGTTCTGACATCGCTGTTCAGAACCTGCGACGTTGGCTTTCCGTAAATAGG
CGTCATGCTTGTGTATACATACGAATAAGTGTTAGGCACTGTCTTGTTGTTCGATTGCCTCCCCCTCCCTCCCCCGATCCTCGGGACCAGGCACGCGGGT
GTAGGCACGACCATGTGCACTAATTGTGCACGTCCTGCTTATTCTCAAAATGCGCTCCTCCACATCTGGGGCCCTCGAGCCCTATCAACTCTTCTTCTTC
TTGTTTTTTCTGTTTTTCTTAGGTTGCGTCTTTTTTCCCTCATTCTGTCTCCTTCTCCCCCTACTTAAATCATTCTGTACGACTACTTCCTGTCCGAACT
ATAATAACACCTCCTGCCTGTTTTTGCGCGGTCGTCTGGCCCCAT
>LE_HBa0161B22_SP6_201295 (trimmed for quality and cloning vector)
GA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.12559
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161B22
Clone
Clone name
hba-161b22
LE_HBa0161B22
C12HBa0161B22
P161B22
Clone type
BAC
Contamination
none
Estimated length
121,404
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found