Clone Read LE_HBa0161E19_SP6_201433

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161E19_SP6_201433
Primer
SP6
ID from Seq. Facility
LE_HBa_161_E19-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 745 raw
Sequence
>LE_HBa0161E19_SP6_201433 (raw untrimmed)
CTCCACTCATAAACAAGCGCACGGCGCCGTCCCTCTTTAAAGGGGGGCCGCACAAAGAAGAGAGGGGGCAGAGGAGGAAAGCANACAAAAACAACAGAAA
CGAGACAAACAGAGACTTCTAATAGAGTATGAGATCACGCGA
ACTTAGTAATTTNTGTACTTGTAATGTTATAATCAGACTAGACCTCTGAACATGAGAT
CACTGGCAAGATGCCCTAAGAGCAAACCGGCTTCATTGTAATCCCATGTCAGATCTCGTTGTAACGGACACGTAATTTGGGCGCGAGGGCCCCGCTCCTA
CCCACTCGATCACAAAGCTGTCAGCATCAGCCATCCCGCGCCACTCTGCCAGATCCTCCTGCATCGCGCCTGCCGGACGCCGCGCCACAGCTGCTCTTCT
AAGGTACCCCGCACGGCAGCGCATGCCGTGGGCCGCAGCAGCAGCACGTACCGGCACTACGCCTTTGATCGAGCATTCTTTGTTAGCCTTCGCCTTCCCA
CTGCTGTCATCTTCGCACACTGCAAGCCAGTTCCGACGTCCCAGCACGGGCAGTTGACGTACATTAGCACCTCCATATTCATGACAATATACAGTGGCCC
CCACCCGCTACCACATTACCCGTCCATACATACAGTCGTAACACTATACTGCGATATTTCTCTTTACGCTTCCGCTGCCTACGCCCCACCTCGTGACCAC
CGCGAATCGTGTTACGTCGAGCTAATAACGTCCATCTCCATTATN
>LE_HBa0161E19_SP6_201433 (trimmed for quality and cloning vector)
ACT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.36982
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161E19
Clone
Clone name
hba-161e19
LE_HBa0161E19
C12HBa0161E19
P161E19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found