Clone Read LE_HBa0161I14_SP6_201615

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161I14_SP6_201615
Primer
SP6
ID from Seq. Facility
LE_HBa_161_I14-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 893 raw
Sequence
>LE_HBa0161I14_SP6_201615 (raw untrimmed)
TCATGCGGACCAGCAATTCAATTGAAAGGGGGCGCTCACTCTTTTAACTAGAGAATACTCCTCAGCCCTTCTGTGAGATATTATGCTCGCTCCTAACTTT
TCAGTTTTTAACAACTCAATGTGTATACTCTTCCGCAGTTCACACGACACAGGCTTCGCGCGCTTAGCTAACTCCACTCATNAATAACTCTGCATACTGA
CGACATGGTGACTCGTGGAGCTATTTGGCTAGATTCGTGTGCTCCATACGAACATGAATGCNGAGACGGCCCTACGCCCGACCGTCGTAAAGGCAACGCA
CCCTGTCATGAGTCGCGCGACGTCGGACGACCGGTCGGCGAGTGAGACTGACTGAATGTTCATTTGAACACATCTACATTCGAATCTTGCTACAGAGTCG
TCTCGTACTATCTTTGATCGTCGCAGACGAATTCCCAAGCTACATGTTCTCATCGTCACACATGATATCGCACTCTATGGTATCACTCAAGCATGCGTAG
CCGGGCCTCTCCTCCTCCCCTAACTTCTGACTGAACTCTGCAACTGCTATGTGCTTTACTCATGCCTCGGCTTAACACTATAGACTACGAGCTGATCGCC
CATCTCGTTCGTCACGCGCTGAATCGCACGTCCTCTTGCTGTCTTGTGCATAATAACTTTACCTGATTGCTGGTTATGATGCTTGCTTGCCAGAGCCCTC
AATGTGATGTCTAACTGTCATAGGGTGTGACACGTGAGAATACAATACTAGATCATATTCGAAGAATTCATTAACGTTACATTATTCTTACATATAATTT
TAATGTATCATGCATTATTAATAGTATTTTATAATCAACAAATATAACATCGAAGTGTTTTGCACTCTCATATTCCGTCTGTCCTTCACATAT
>LE_HBa0161I14_SP6_201615 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161I14
Clone
Clone name
hba-161i14
LE_HBa0161I14
P161I14
Clone type
BAC
Contamination
none
Estimated length
125,626
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found