Clone Read LE_HBa0079M06_SP6_20170

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079M06_SP6_20170
Primer
SP6
ID from Seq. Facility
LE_HBa_079_M06-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 798 raw
Sequence
>LE_HBa0079M06_SP6_20170 (raw untrimmed)
AACCCTCTCTAAATAACATAACGGCATACTCTATTAGTGATTTTTGCCAACTTCGGTTTTACCCCATAAAAGGNCACAAAAAATANNGAANNGAAANNAA
NANCACTTTTAGAGAAANANNNAAANGANANANNAAAANANNNAAAANAANNGAACCAAANANNGAGAGGANNAAANGGAAGAAGGGAAAAGAAGAAAAG
ANNAAGAAAANGGGGGAGGAAGNGAAAGAANGAGGGAAGAANANGGAANAAGGNAGAAGNAGGAAAAGAGAAAGAAGAAAGAAAAGAAGNGAAGANGAAG
NAAGAAAANAAAANGAAAAGAGAAGAGAGAGAGAGGAAAAAAGAGAAGAAAAAGAGAAGAGGAAGAAAAGAGAAAGAGGAGAAAAGAAAAAGAAGGGAAN
GAAAGAGAAAGAAAGAGAGGGGGGAAGAAAGGGAAGGGAAAAAGAAAAAAAAAAAAAAAGAAAAAAGAAGAAAAAAAAANGGGGAAGAAAAAAAAGAAAG
AAAAGAAAAAGAAAAAAAAAGAAAGAAAANAGAA
AAAAGAGAAAAAAAAAAAAANAAAAAAAAGGAAGAGGAAGAAAAGAAAGAAANAAAGNGNGAGAGG
AGAAGAGGAAAGAGAGGAAAAGAAGAAGAGAAGAGAAAGAGAGGNGAAAGAGAAAGAGAGGAAGAGAGAAGAGAAAAGAAGNAAGAAAGAAAGAAAAAGG
AAAGAAGAGGGGNAGAAAGAGNGGGAAGGAGAGAAAGAAGGAGGGGGAAAAAAGGAAAAAGGAGAGANAAGAAAGAGGAAAGAAAAAAAGAAAGGAGN
>LE_HBa0079M06_SP6_20170 (trimmed for quality and cloning vector)
AA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.19905
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079M06
Clone
Clone name
hba-79m6
LE_HBa0079M06
C08HBa0079M06
P079M06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found