Clone Read LE_HBa0079M24_SP6_20206

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0079M24_SP6_20206
Primer
SP6
ID from Seq. Facility
LE_HBa_079_M24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
783 trimmed for vector and quality, 824 raw
Sequence
>LE_HBa0079M24_SP6_20206 (raw untrimmed)
CGGGCTAAGTGTAGTAACATAAGATTATTTGATATTATATCTGATAAAAAATAATAAATATCCCGTTAAATAATTAACCTTTGCGTAAAATTTTGAGAAA
CTTACATGAATATATTATAATAAAAAAATATTTACCATTTATAACAATAATTTCTTTCACTTTATCAGTTTTAATTTATTTATAATATAAGTTTAATACA
TATTACAAAGAATAATTTATTATTCACATATAATACAAATTTTAATGATAGATAGTATATTTATAATGCAATGTTTCAATATTTTTACCAAACAAACATA
ATATATTTTTAAAAACAATTATAATTCATATATATTGTATATAATTCACTTTTAATTCATATAGCATATTTAACAGAATATTACTAAAATAATAATAAAT
AAAAAACATTACTAAAATCAGTAATTATTTATTAAAATATAATTTTTCCTAAAATTATACCAAGGCATGTCGTCTAAGAAATTAATATAAAAAGGCCGAC
TCTAAGTTTTTTTTTTTTACCACACGTGAAATGAATTTCTTAATATGATATTTATAAATTATAATATATTAATTAAAAAAATATGACCCCTTTAAAGTTT
AATAATTCATTGATATTATTGCAAACGTGACTAAAAACTAAAATAATTAAGTGAAGAAGAAAGAGAAGTCAACAAGTTGGCATATGTTGAATACACATTC
TTTTATTATGGAGATAAATTAATATTCCTTTAGTCTCAATTTATTTATCATTTTTCAAATTTTAATATTTTAATAAATTATTATTTAATCACAAGATTTT
ATATTGTTAATTTTTAAAATTAAT
>LE_HBa0079M24_SP6_20206 (trimmed for quality and cloning vector)
ATTATTTGATATTATATCTGATAAAAAATAATAAATATCCCGTTAAATAATTAACCTTTGCGTAAAATTTTGAGAAACTTACATGAATATATTATAATAA
AAAAATATTTACCATTTATAACAATAATTTCTTTCACTTTATCAGTTTTAATTTATTTATAATATAAGTTTAATACATATTACAAAGAATAATTTATTAT
TCACATATAATACAAATTTTAATGATAGATAGTATATTTATAATGCAATGTTTCAATATTTTTACCAAACAAACATAATATATTTTTAAAAACAATTATA
ATTCATATATATTGTATATAATTCACTTTTAATTCATATAGCATATTTAACAGAATATTACTAAAATAATAATAAATAAAAAACATTACTAAAATCAGTA
ATTATTTATTAAAATATAATTTTTCCTAAAATTATACCAAGGCATGTCGTCTAAGAAATTAATATAAAAAGGCCGACTCTAAGTTTTTTTTTTTTACCAC
ACGTGAAATGAATTTCTTAATATGATATTTATAAATTATAATATATTAATTAAAAAAATATGACCCCTTTAAAGTTTAATAATTCATTGATATTATTGCA
AACGTGACTAAAAACTAAAATAATTAAGTGAAGAAGAAAGAGAAGTCAACAAGTTGGCATATGTTGAATACACATTCTTTTATTATGGAGATAAATTAAT
ATTCCTTTAGTCTCAATTTATTTATCATTTTTCAAATTTTAATATTTTAATAAATTATTATTTAATCACAAGATTTTATATTG

This is probably not a useful sequence.

Problems:
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.821511
Expected error %
0.51488
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0079M24
Clone
Clone name
hba-79m24
LE_HBa0079M24
P079M24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found