Clone Read LE_HBa0171F16_T7_202108

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171F16_T7_202108
Primer
T7
ID from Seq. Facility
LE_HBa_171_F16-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 935 raw
Sequence
>LE_HBa0171F16_T7_202108 (raw untrimmed)
TTAATGGCGAGCCCTTACATATATCTTTTATCTTCTTCATATATGCGTAATTTGTGTATCTAGTTAGTTGACGACTCCCTGCTATATAATCTCGAATGTC
GTCGTCTAGGTACACGTCCCATCTACATCGGATGAAACTGCTTTTCTATGA
AAGATCTTTTCCTATATTCAACGGTTCCGGTTACTGACTACCTCTTGCT
CTAATGGGTAAGAGCGATCATTGTTTCATCTCACCACACATCAATTTAACATGTGGAACATGCGATTTTACATATATACTATAACATAAATTTCGCACTG
TTAGCTTTTATCTTTTCGAAATGATATATCTATTATTTCTTTTGTACCAAAGGTTAATATTATTTTACATCTCTCTATTAAGATACTTCTATTAGCTCTT
GTGCATTTTGTCTTCCCAATTAACTTGTCCATACTTTACCTTACTATTTTCTCACTAACTCTATATATCCAACTATTCTACCACTATTAGCGTTTATATC
CTTTTCCTATTCTTAACTCTATTTTTTATGTTTATCTCTTTAGCTGTGATCTTGTATTATAACAAATCACTACTATTACATTTGTTCAATCTCGATTTCT
TCTTTCTTGTCTTCACATTTACCTTATAATTTGCTTCTCTTGCTTCCGCTTATTATTATCTCTGATTTCTCTTCATTTATTCTTTATAATATTTCTTTAT
TTTTAATCCCAATTCTTAATATCTCCTTTACCCCGCAACTCATTCATATCTATTTTTTAGATTATATTTTCTACCTAACTTTTTTTTTCATATCTTTTTA
TATGTATAAGTTATTTATACTATCTATAAATAATATATTGTCACTATGCCGATCTCCATTAAAATATCACTCCTACATATCTGCATTCCTTCACATGTCT
CTATATAGACTTTACCGTTGAACCCTTTTTAATAA
>LE_HBa0171F16_T7_202108 (trimmed for quality and cloning vector)
AAG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.7301
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171F16
Clone
Clone name
hba-171f16
LE_HBa0171F16
C08HBa0171F16
P171F16
Clone type
BAC
Contamination
none
Estimated length
104,160
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found