Clone Read LE_HBa0171J15_T7_202203

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171J15_T7_202203
Primer
T7
ID from Seq. Facility
LE_HBa_171_J15-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1402 raw
Sequence
>LE_HBa0171J15_T7_202203 (raw untrimmed)
CGTATATCTTCGCGGGTGGGGGGGGAGTCTCCGTCTCCTTAGGAAGGTNGCAGAACCGTAGGGACTGGCGCACGGCGAGAAGCGCGTTCTAATGTCTCTT
TCGTGGTGTTCTGGAAAGACGCACCCCTTCTCCTTTCCATCTTCCCTTCCTTTGGTTCTTCTGTCTTTGTGCCGCCGGAAGATTGGTGTGTTGTCCCTCT
CTTACAACACGCACCATATTCATCTCTGTTTTTCTCGCGAATTATAAATAAGGGGGTTGGGTAGATATAGTAGGTCGTATAGTCGACAAAGTAGGGTATG
TATATAAAGTTAGGTGGCCAACAACAGGAACTTTGTGTGAGCCATAGTNGATGGTGGGTGGCTGTAACTTGCTGCTACGCAATGTCTATGTCAACATTTC
ATTCTGCTCCCCTGCCTTATTACCTGCTTATGCGCACATGCTNCTCATTGTCGTAAGGCAGATGTTCATTGTATGTGTCGAAGACATACGGTGTGTGTGT
CGCTTANGTACCCTGGCATGATTCAGTGAAGCGGAGGAACTGTGGGGTGGGCGGGGTGGTTGTGTTTCGCCTCATTGCTCCACCGATCTAAACTTGTGGG
CTTTTCCCCTCCACTTGCATTACCTAGTGTTTCTTGTCTTCTGTCCTCGCACGTCTGTATGGTAAGTCGTCTGTAGCCGTGTGTAATNGAGCTGTACATA
GAAGTGCAGTACGCCTTGCGCCGATCTGACGTATGTTTCTACTGCTACTAGCTAGATGAATATAATATTTGTTGTGNGTTGATTATGATTNTCGCACCTG
TGTTCTTCTGTTGTAGTATCGTTAAACTGAGTATGTATGGATATATAAATGCTCATGTTGGTGACTGACACGTAGCTGTATGACTATTGGATTGTGCGTG
TAATTGTATCATAGTTTATGGTTGCTTCATTTTTGCTCCACTTCTCCGTACACGATTTATGACCGTTTTGACATATTTGATTGGCGTTAGTGAGTGGTAC
TTACAGGACACGGTGTTAGATGGCGTTATGTAGCAATAGGCAGTGTGTCTACTATATGGCTCAGTCTGTGAACGCGTGACATGGTATGTGTGAAGTTCGT
GATTGGGCGTGAGTAGGTGGTNGTTGCTCTACTTATTATGTATTCTCTGCAAGTCTCTCTCTTTTGATGGTCTTCTTGCTGTGGTTCTTATATTTTGTAA
CTATGTGTGATGCGTATCTGTGAGTGCTATTTCTACACTCTTATTTGCTGCTGTCGTTGTGTGCTATGTTTAGTTTGTCTTCATGTGATGTATCCGATCT
GCTATTTGGCTTGAGCTGTTTGCCTTGTGAAGTGTAANANGTGTAGCGTTGTTAGATCCGTAGGTGGTTGAGGGAATCTGGTGTAGCGCGGTCGCGGTGG
TG
>LE_HBa0171J15_T7_202203 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171J15
Clone
Clone name
hba-171j15
LE_HBa0171J15
P171J15
Clone type
BAC
Contamination
none
Estimated length
100,574
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found