Clone Read LE_HBa0176K10_T7_203374

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176K10_T7_203374
Primer
T7
ID from Seq. Facility
LE_HBa_176_K10-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1958 raw
Sequence
>LE_HBa0176K10_T7_203374 (raw untrimmed)
TAGATCTGGTTGAATCACGATATCACACATACAATAGCTAACATATGCGAGCGAGGTCATATACATCTATCAGTATAGCAGCACAACACATCTCACAGAG
AGAGCGGAGNTCAGATCACGACGAACTGTCTCGTCTGATCGCTTTCAGCTAATATTATAGATCTCATCTATGATCGCCACCGTTGCTAGGCGCAGAGGAG
CNCTATCAACGATACATNAGCNGANANCAGAGAANCGANGTCTNCGAGTCATCACTTACTGCTGTGTGCACGCTCTCTCCTCCATCGTACTAGTTGGCTT
CTACAGCCAGCTCTGACAGCTAAGTATGTGGAGTGCGAGAGAGTGTGTGCACTAGTATATGAACGACATGATGTCNGATAGTACGCTTCTAGTATATTNC
TACGTGATAGTTGACATCACGCGCGATGAGCACGGAGAGACGCACTGCAGACATGAGACACTGACANGTACAGCATAGCCTGTCGAGCCTCGACACGTAT
GCAACGCTATACTTCTACACAGATGCACGCTCTTCACACTCAGANATANTACGCTATTCAGAGCTACATTGTGANTACNGATTAGATGATTTGTCACGTA
GCTATGACGAGTAAAGCGNGATGTCACGACTNCACAGCACCGCGCTTCGATCCACNTATGTAGTGTGCTGGATGNACANTNATAANCTCACTTTNTACNT
ACTATCTCACGTACANCNCTAGTATGTNTGTAACGTACTGCGCANCTACATATCCGCATGTTATACGCCACTAGCACGTACTACNANTNACTCNCNCTCN
ANCTNTAANACTAATACACCGTNGNTGCACTTCACTGTGTGTCTCGACTACTGATCTTGTATGATCGCTATTANCTACTATNCGTATACTGCTGCTCTGT
ACTATGCTGCTACATGCTAGAANCANCACACNCACACGTATGATCTCGTCTGTCTACTACCAGATAGTCTCATTATTGTNCAACATGCTACGCGTACATG
ACGCCTCTACTCTTANTATCNCGTNCATNTTGCCTCACANCTCACGACCGTCTGATACGCGCTGAGTAACGCGTGACTCTTTGCACGCGTACG
TACACTA
TNTGATGTTCTATCTGTGCATACTTGCTACTAACTTCTAAACTGTACACANAAACTCGTATAANATNATANGCTACCGTGCGANGATGCCTCATTCTTCT
TATNTGCTTATCTACTATTAGTAGANATTACTATGACGTCATNACTTACTTACGCTCTNCACATGATCATATGTGTNATGATCTATCATACACACATACC
AACATTATATATNCACACTTTTTCTCGCCTATCTGCACATATACCGTGATAGNGATTTGATAGATTANTATATATNGAAGTTANGAATGATGTANATAAT
GTATAAAAGATGAAATATNAGAGGAGATAAGGGATATTGATGGTGTGTATAATATATAATATAATATATATTGATGTAATGATATTGTGTATGATTGGTT
GGTGTATGTATATATGTATGTGTTAGATATGAGAATAATNANTATATANTGTANGAATNAGATTGTATATATGNTGAGATGTATAGGNTTGTATATAAGA
TTAGTATTGATATTATTTTTATATAATANAAANATTTGTGTATTTTAATTGAGATGATAATATGATTTGATTAGTATATATATATATTNTGATGTTAATN
GTGGTGTANGGTGATTAGTAATTGTTTGTATATATATGATATGATATGAATATATATAAGTGGATGGATAATATGAGATTATGTATATTNTNATATTNGT
ATTTNGAATATGTAGTGTNGATGAGTGTGATAATTATTATAGATATATTGGATTTGATATGATATAGTTGTAGTGGNGTTAAGAGTGTGATGATGTNATG
AGNTTGAGATATGANGAGAATAGATATGAGNTATGTGATGAAGTATATGTGATANGTA
>LE_HBa0176K10_T7_203374 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.36881
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176K10
Clone
Clone name
hba-176k10
LE_HBa0176K10
P176K10
Clone type
BAC
Contamination
none
Estimated length
52,122
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found