Clone Read LE_HBa0080E24_SP6_20590

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080E24_SP6_20590
Primer
SP6
ID from Seq. Facility
LE_HBa_080_E24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
655 trimmed for vector and quality, 753 raw
Genbank Accession
DU037630
Sequence
>LE_HBa0080E24_SP6_20590 (raw untrimmed)
AAGGGTTCTCTAGGGTTTTAATTNGGGACCTTTTTAGGATGAAAATCCTTCAAAAAACCTTTTGTAGTAATCCCTCAAATCCAAGAAGGTTCTAATATCT
GTTGGAGAGATGGGTTTGGGGTAGTGTTGTAGTGCCTAAACTTTTTAAAAATTCACTCGTATCCCTCTGTTATATACCACATGACCAAGGAAAGTAACTG
AATGTAACCAGAATTCATATTTAATGAACTTAGTAAATAACTGGTGAAATTTTAGAGTTTATAGAACAACTATTAGATTAATCGCATGCTCCTCCACATT
TCGAGAATAAATAAGGATATCATCAATTAAGACAATAACGAACATGTCCAAGTATTGTTTGAACATATGTTCATCAAGTCCATAAAGCTGAAGGAACATT
GGTTAGTTGAAAAGACATAACTAAGAATTCATAGTGACCATACTGAGTTTTGAATGATGTCTTCAAAATGTCTTTATCTTTGAGTTTGAGTTAATAATAG
CCAGATATGAGGTATATCTTAAAAAATCAACTATCACCCTGAAGTTGGTCAAACAAGTCATAATTCATGGGGATGGATACATAATATTTACTGTAACTTT
GTTCAACTAATGATAGTCAATGCACATTTTGAGAGAATTTTCTTTGTTATTCACAAATAACATTTGATGACTTCATGGAGAGATACTGGGACTGATGAAA
CCCTTATCTAGAAAGTCGTTCGACTACTTTTTTTATTCCTTAAGTTCGACTAG
>LE_HBa0080E24_SP6_20590 (trimmed for quality and cloning vector)
AAAATCCTTCAAAAAACCTTTTGTAGTAATCCCTCAAATCCAAGAAGGTTCTAATATCTGTTGGAGAGATGGGTTTGGGGTAGTGTTGTAGTGCCTAAAC
TTTTTAAAAATTCACTCGTATCCCTCTGTTATATACCACATGACCAAGGAAAGTAACTGAATGTAACCAGAATTCATATTTAATGAACTTAGTAAATAAC
TGGTGAAATTTTAGAGTTTATAGAACAACTATTAGATTAATCGCATGCTCCTCCACATTTCGAGAATAAATAAGGATATCATCAATTAAGACAATAACGA
ACATGTCCAAGTATTGTTTGAACATATGTTCATCAAGTCCATAAAGCTGAAGGAACATTGGTTAGTTGAAAAGACATAACTAAGAATTCATAGTGACCAT
ACTGAGTTTTGAATGATGTCTTCAAAATGTCTTTATCTTTGAGTTTGAGTTAATAATAGCCAGATATGAGGTATATCTTAAAAAATCAACTATCACCCTG
AAGTTGGTCAAACAAGTCATAATTCATGGGGATGGATACATAATATTTACTGTAACTTTGTTCAACTAATGATAGTCAATGCACATTTTGAGAGAATTTT
CTTTGTTATTCACAAATAACATTTGATGACTTCATGGAGAGATACTGGGACTGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.940628
Expected error %
0.372292
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 165 E Value 1e-39 Identity 15.30% Align. Length 653bp (99.69%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 164 E Value 1e-39 Identity 15.30% Align. Length 653bp (99.69%) Frame 3
putative gag-pol protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080E24
Clone
Clone name
hba-80e24
LE_HBa0080E24
P080E24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found