Clone Read LE_HBa0080O24_SP6_21070

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0080O24_SP6_21070
Primer
SP6
ID from Seq. Facility
LE_HBa_080_O24-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
17 trimmed for vector and quality, 1111 raw
Sequence
>LE_HBa0080O24_SP6_21070 (raw untrimmed)
GCAGCGCGCTTATGTGGTAAAGAGAAGAATCCACGTCTCCATCTCCTGATTTGATTACGTGTCTTAATCATGTATGTCCACAGACTAAACATGACTCCTC
CTCCCCCTTTAAAGGGGCGGNTGAGGATGAGAAAGAAAATAGNGAAAGAAAGTAATCCTCCCCTATGAAGGGGAATTAAGTAATNAAGAAGTGGTTGAGA
TTGGAATATGAAATGGAGTGAGTAATATAAAAATATATTATAAATAATGCATATACTTATATATTGAGTTTAATTTATAGAGATAAGAGAATTGTGAATG
ATTTGAGTTGAAAGATGCCTTTTGACTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTGTTATATTATGTAGTCATTTTGGTGTAAAACATAT
ATTTGAAATGACATTTTTTATTTTATTTAATATTTATTTATATTTCTTTTTCTTTTTTTTCTGTTTCATTGCTAGTTTCTTTAGTCTTTCTTTCCGTACT
TTCTAATTTTTTTCTTGGTTGTCTTTTTATTTTTTCTTTTTATGTTTTATTGTTTTTTTTCCTTTATTTTTCTATTATATATTCTTTTATACCTATATAG
TGATAATTGGATGTTTAAGTACACATCTTCCAAATTGATAATGTTCAGGTCAAANACGCGGTGGTTCGAGAAGAGATTGTGGATGAGTCAGCAATATATT
AATAGACAATTTTGTTTTTTTATAATGGTTTTTATCATAATATTAATTCATATGTAAATTAGATGTAAATGAACCTACTATAATTGATTATAAATTGCTA
TCATTGAATTACTAAACAGTCACACTGTAACACGCTGATCTTAATGAGATTAAGGTTAGGGGTTTCATGCTCCAAGGAGTTATGTCGTTTGGTATACAAA
CTCATGATGCAATTTTCGTTTTTGTGGATTCGATGACGTATTCTTGTGACTTTTATTGATATTCTTTAGGTTTCTGATAAAAAATATTGATTTCTAAGGT
ATCTTACATCCCTAGAGAGATCATTGTCGAAACCCGACATAAGGTGTCCTAATAAGAATAGTAATATCGTCATGAATTTATGCAAAATTATGATGACGAT
GATTTAGAACG
>LE_HBa0080O24_SP6_21070 (trimmed for quality and cloning vector)
TTTTTTTTTTTTTTTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.256537
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0080O24
Clone
Clone name
hba-80o24
LE_HBa0080O24
P080O24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found