Clone Read LE_HBa0005P17_SP6_2288

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005P17_SP6_2288
Primer
SP6
ID from Seq. Facility
LE_HBa_005_P17-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 424 raw
Sequence
>LE_HBa0005P17_SP6_2288 (raw untrimmed)
AAGTTCTTCTGANNNNNNNANNNNNNANNNNNNNNNNCCTGAAGNAAGGAGANGGGCCTAGGAGAATTAATTTTATAGGGAATTAGATTGCCAGGGAAAT
AAATATTGGGGTAAGTGATGGATTTTTTAGATATGTAAAAGGTTTTAAGAAGTTGTGGTTATTAGGATTTGGTAATGGAGAGTGTGTAATGAGGAATTAT
TTAATTAATAGATTTTTGTGTATTGGTTTGGGATGTAGATTGTGTTTATGTGTAGATTTGGTGGTATTGTAATTTTTTTTATGATAGATTGTGATGAATT
ATAATGTATGATTTGAAAGAATATATTACCTTTGGTATTTTTATATTTGAATGTTGTGATTGTTTTAAAGTTTTGAAATAATTATCTATAAAAAAGGATA
TTTTTATTTTAAATGAATTTTATA
>LE_HBa0005P17_SP6_2288 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005P17
Clone
Clone name
hba-5p17
LE_HBa0005P17
C02HBa0005P17
P005P17
Clone type
BAC
Contamination
none
Estimated length
246,830
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found