Clone Read LE_HBa0089P03_SP6_25684

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0089P03_SP6_25684
Primer
SP6
ID from Seq. Facility
LE_HBa_089_P03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
42 trimmed for vector and quality, 913 raw
Sequence
>LE_HBa0089P03_SP6_25684 (raw untrimmed)
GGGGGGATCCAAAACGCAAAGTGATGAGTTTGAGATGTGTTCGTGGAGAGAAATCCATTGAGGATGCTTTGTCCCCGGTAGGAGGGAANGNNNNAGNACN
AAAGAANGAGAAAGAAGCTTTTGGGCGGGGNAAAGANGCGGCGGAGNCNGAACCACAGAAAAGCAAGGAGGAAGNCNCNNNCCANACCAACAAACAAAAA
ANGGCAGAAGAAACNANACAANCCCGCGAGGACGCACGAGNNCAAGCAGAAAAAAACACANCCCNGNGGACGGAGGAAAANAANAGGGGACAAGNNGGGA
GAACNGANCGAGAGAACGAGACGAACAAGCGCAAAGGGGAAGCCGAAAACCAAAACAGAAAGCAAAGAGAGGCAACCACGACAACAAAGACNCNAAAAGA
AGCCCGGCCGGAGACAGGAAACAAACAAACCCAAACCCGCCACAGAACAGAGGAACGCGGAAAACGAAAAGAGAGACCCGACACCCAAGGAAGACGCCCC
GACCACAACACCCCGCGCACCACACACCACAGAGCCCAACCAAAAACCGCCAAAACCACCACAACCACCNGGCCCCGCCCCGCCAACAACACCAAAGACC
CCGCAGACGACCAAACGACCACCCCCAACCCCCGAGAGCAGACCACGACCGCACAAGCACACGACAGAGACCACGCAAGCCAGACACGAGACACAACAAA
AGCAGAACCCGACGACCCCCAGACGCAGGACCGGAGCGAGAGCGCAGCGAAGGCGAAGGAAACAAACCGACGCACAAGACGCCCCGACCCCCCCCCCCAA
CCGCGCGAGACCCGCCGACGACGCCCCACCCCACCCCCAACGACCCCGAACACAGCCGCACCAACGACGGAAGGCCCAGGGGAACCAAAGAACCCACGGA
AACCAGAAACAAA
>LE_HBa0089P03_SP6_25684 (trimmed for quality and cloning vector)
TGAGATGTGTTCGTGGAGAGAAATCCATTGAGGATGCTTTGT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.794392
Expected error %
0.962829
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0089P03
Clone
Clone name
hba-89p3
LE_HBa0089P03
P089P03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found