Clone Read LE_HBa0196J23_T7_258696

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0196J23_T7_258696
Primer
T7
ID from Seq. Facility
LE_HBa_196_J23-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1881 raw
Sequence
>LE_HBa0196J23_T7_258696 (raw untrimmed)
ATCTTTATAGTGTAGCTTCCGGTGCTATGCCGACGGATGAACGGCGCATATCTCCATATCATATTACAGAGAGTCTNACTATGACTAACCGNACTGCTAT
TATCTTTTTTGAGTAAGTCCATCGAAGATATTATGTTACGATTTGTCGGACGAAAACGCTCTACATCCGCCGTGACACTAGACCTCTTTCTCCATTAGAT
AACATGTACTGACACTTCAATTCGTCCGAGCGACTTATACTGATCCTTACATACTATAGGCACTGGCCTACGCTCGACACAACTGAGTCGTACGTTAACT
ATATATCCTTGTGCTTACGACTACAGATAGTCGCCGTCCATCACATCCCATAGTGAAGCGCACTGGCGATGCTAAGTACCAACCCCATGCGTACAGCGTT
GACTTGCTTCGCTTGTCACACACTCTACCGCGTCGCGCTGCTATCCATGTATGAATATTGACAACAGTCATCTCACGGTTGCTCACAGCTATCGTGCGCA
GGATCCCACTACACACCGTGCCGTGATGATTGAATGGTCGATACACATCGCTGAAGCCTGCTACTGTTTTCATGAATCCTACACCTCACCTGTAACGACC
GCAACCAAAACTTTAATCTCTGGTGTCTACTAATTCACACTCCTAACCTGTTGCCGTGCTCGTGCGTAATCACATTAAGAACTGGAAGTATAGTACTCTT
ATCTCTCTTACATTGACANGTGCATCTAGCGATCACCGGCACTTCTATTTTCTCGGTATCTCCATTACACCTACCACTGATTATATCCATATCGCCATCT
GCTGCCAACCTATCTCGTTCTATCTCAAAAGCCTCCGTGTCACTACTCGAGCCCGATGCTCTTATAATCTCACGCTCTTGCTGTAATCATTACTCACTCA
TTTACTATGCGCTGTTAGANCAATGCTATGCCACACACAATCCCTCCGCCATACAGATACACTCTCTAACTACTTTCGTGATCATATCTTCCCATGCTAA
CAAAGATCTGCTGACTCATATGCCTGCATACTCGCTTCTCTTATATGAGTATTGTCATGATGTTCTAACAATATTCTATCTCTNCATCTGCTGACANCTT
CTGGAATGTCTATAAGTACACCTATCGGACGACTCTGTGTATCACACACATTCATGTGCGATATCAATGCTATTACTCTCTCTACACGTTCGCGATACTA
TCCTCAAATCGAATACCTCATCGTTACCGATCCAACCACCTCCCCATGAACTATCTCACTGATATACTGTTCTTATTCGGTCATTCTCTGCCACTACAAC
CACCATCTGCGTACGGCATATCTACTCTATCATCGATCATGCCGTCGCACCATCACGGCGTTCGACACCGCTTACCTGTACACCCGTCGACAACTCACGA
GTACTGTCGACTCTATCCATGTCCACTGTCCGCTCATCGTTGACTACATATGAAACAACTNCACACCACTACCTGTTTCTTCACTCTCCTACCGCTGTGC
GCGCATACATGCTTGCGTCGACTACNTCTCTGAACCAGTCACACCGACCGCTCTCACCTGCGTATGTATTCAGTGCATTCATTCTCGTCCATCATCACCT
ACTCGTCGCTTACTATGCACGTAAGAATATGCCTGTGAACCCGAACACACCTGGCCGTTGAATAGTGTTCACTCGACGACTCTCACACTCTACACATCTC
TATAACATCTATTATTACAACATCTGCGATCGACACATGACTNCTTGACTATTCTTACCTGACGCGTACTCTATCTCCTCGCGTGCATCGCTCTCTCCTT
CTTACTCACTGANTCACTGTTATATGCGTACGATGCTACTCACTGCATATCGATGTAATCTCATCTCACTTGACATACTCN
>LE_HBa0196J23_T7_258696 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0196J23
Clone
Clone name
hba-196j23
LE_HBa0196J23
C12HBa0196J23
P196J23
Clone type
BAC
Contamination
none
Estimated length
101,259
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found