Clone Read LE_HBa0196C17_T7_259642

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0196C17_T7_259642
Primer
T7
ID from Seq. Facility
LE_HBa_196_C17-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
9 trimmed for vector and quality, 949 raw
Sequence
>LE_HBa0196C17_T7_259642 (raw untrimmed)
NGGGTATGTCTGAGATCCCTCTAGGAGTTGTGGGCGTCGATCTTTCGTGAAGCGTTTCTTTTTGAGATTCATGAAGGAATGGCTCGTATGAGAGTTCCTT
ATGCGTTGGTATGTACTCCATGTTTTTGGGTGCATGCATGAGGTTAAAGATGTTGTCAATGTCTTGTCGAACCCTCCTCCTGCTATTGATGAAGGTATTT
ATGCAGAGGACACGCTTGTATGTTGTGAGCTTAGGTCGTGCTTCCGACCAAGAGCGCCAAGGATGAATGTTGAATGAGTGCCTGCACAGTTCAAGTATCT
TGTGCCAGATGTAACGAGTTTACCACCATAATGTTAAGTACGTCGAAGATTGCAACTACAACAGCGCTAATGGCTTCTTTGGATGGGCTTACTATAACCC
GCTTGATAGAACTGCTTTTGAAAGTGCTCAAA
CTTATTTTTAAAATATTTCTTTATGCGTTGAAATTAAAATGCCGACGTTGTTATGATCTGTCGCGCAA
AGGGATAAATAGGTTACATGCATGTTATGGTCATATTGGTAATTTGAAGATTGTATTAACTATAATGGAGATAAAATCGATTGTGGTCAACTTTATCAGC
TTATCGCGTGCAAGTGGCCGCTTCTCTGCCCAGCTAATACTTGTGACTGAACACTCTTCTATTAACTTGACCAAACTCTTTGATTATTCCCACTGATTGA
AACTCCACTCCCCATTTTACCTACCTTTGACCCCCTTTACCTTCACCGAACAAGACTCGAAAAAGGGAAAATAATAGGGTCCAAAGGGTGTAGCCCTTCA
AAATCCCACAATGGTAAAACCCCCAATTCCAGGTAAACCATTTTCCCAGTTTTTTTCAGGCCCCCCTTTCCCACAAAAATTCTTAAAGAAATTCAGAATC
TAAAATTTCCGCTTTTTTGGAACTTTTTACACTTGTTCTTTCCTTTCCC
>LE_HBa0196C17_T7_259642 (trimmed for quality and cloning vector)
CTTATTTTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.797799
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0196C17
Clone
Clone name
hba-196c17
LE_HBa0196C17
P196C17
Clone type
BAC
Contamination
none
Estimated length
103,134
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found