Clone Read LE_HBa0137A03_SP6_260271

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0137A03_SP6_260271
Primer
SP6
ID from Seq. Facility
LE_HBa_137_A03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1613 raw
Sequence
>LE_HBa0137A03_SP6_260271 (raw untrimmed)
TTTGGGTAGAGTCCCCTCCAAGCTCCCAAGCGTACTGACTACAATACTACATTGTTCGAGGATTCTCTAGACTTACCTCTATATCGTACTCGCTGCTAGC
CTAGCACACTGATGTACCTTATTGGTGCTATCGTGCGTCTGTGTGAAGCACTTGTATA
GTGAGCTAGATGGTTACCTATTAATAGCACGCAGCATGAGTC
TTGTCTTAGTGACGCGGATATCTGCGCTACATGATCGCTACCTATAACTACGCCATATTATAGCCGACCATCACCTCTCTATTGGTTGCGCTATACTAGT
CGCTGCCATGAGACAACTCAGTAACACTTAGATTCTATGCGGACTACTCGTGTATGTATATGCTCACCAACATTATCATGTCTATTCTCATACTGNTGAC
AATGTGCTTTGACACTGTATCCCACCTTTCGTNACTGTGTCTTATCCATATCACATCACGCGGCTCGCTCCGTAGACCAACGCCTCACACAGCATTGTCT
ACCATAGATGATACTACCTNGCTATCAGTGCAGTCATACGTTTCTCCTTTCTACCCCTCTCGCATCATACCCGTGTGGCTCATAATATGATTGATCTCGT
CATTACTCCGTTCTAATAAACCGTGTTTCGTTGATTTATCGTGTTAGCATCCTAATCTATACCATAGCCTACACTCCATGGCTTCTTCTTGCCTGCTATA
CTTACCTTCTGCACTCTCATTTCTGCCTCTTACTCACGAGACTAGGTACCTTAGGCNTGACAATGTTGTATCGTTGTCTCATGTCGCTCGCGCACCTCAC
TGATTGATTCGTATAGTTCCGTCAATACATTCTCTCCTTCAATCTCCCTAATATGATATATGAACTATATGCAGCTACTGTCTTCTGATTAGCATTATTT
CGCTCACTCTATATCAGCGTCGTATTCACTCTCTCTCATCTGTCATCCATCTTCAGTCTCTATTGTNATCGCGATCGACTGTCTGTATACTGCTTAGCAT
ACTTGCTTCGCTTTTGTCGTAGTGCAACATGTTTGAAGNCTTATGATCCACCACTAGCTCATTCACTGTTGATCTCGTCTGATGCTGTGATAGCTCCTAT
CTCTGCGTCGCGCCATAATGCTGTTACAGTCTAGACACCATCTCGCTCTATTTACCTCACNCATCGCAGCGTATTNCTGATCCGTATCATTCTGCACGAC
TCTCCACTTATGCAACTGCCTGATTACTCTCTTATCATCTCGATCTGACATGCCTGCTGTGCTATATCACCACCGTACCCTATGATTGTCGCCTCGTATA
CTTTCTATAATCTTGCTCTTGACCATCTCTACTGACACATTGACCGCTCTGTCTCTTCTCTATTGTCTCTGATCTGTGCAGACACACTCTCATCTTACAC
GCTAGTGCGTGCCTCTTATCTAGCTTGTGAGCTTGTTACTCAATTCACTCTATATGTACTTGTATACATCATATCTCATCTCTCAATAGTATCTACATGT
CCATCCGCATAGTACTATAGCGCTATTTCTCTGACGTATAACGGATCATATGCGCTGATCTACTCTCTGCTGCTCTTTACTCCTACGCACATGTCTAGCT
TCTCGTATGTTCN
>LE_HBa0137A03_SP6_260271 (trimmed for quality and cloning vector)
GTG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.835038
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0137A03
Clone
Clone name
hba-137a3
LE_HBa0137A03
P137A03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found