Clone Read LE_HBa0159D05_SP6_261441

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0159D05_SP6_261441
Primer
SP6
ID from Seq. Facility
LE_HBa_159_D05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 948 raw
Sequence
>LE_HBa0159D05_SP6_261441 (raw untrimmed)
GGCACGGTTTTTGGAGGTGACTTCCGTCTACTTTTGACTGTGGGCCTAAACGCTAACTCTGAGAAATGCTAGAAGCTGCTTTTATCTTGCACGTTTTAAG
GCTTATCATCGATTTGTACTCGATTCTCAACGCTGCAGGAAAGTCTACAGCCTCGGCTATGCATGTTAAAAGGGTTTGTGCTGACAAGGTGAAAACTTAT
TCAATCTGTCACGTGCAAGTCAAGCTAATCGCTCCGACTAACTGTCTCCCCGTAAGGTCTTGCATGCATGTAAATGCCATCGACACTGGTTGATATCATA
ACCCAATGTTTTCTCTCCTCTATTCCGTATCGCATAGGTGTAGACCTATGCACATCTAGTCTACTCCATTTTAACACTCTGAATTGTTCCCCCGTCTCCG
ATCATGCTCCTTTATACCTTTTGCAACTCAACTAATATTACAATTACCTTCATCCTTTCTCTTATCCTCTCAACGTCACCCTTCGTATACTCCTCACATC
ACAACTCCTTTCCTTTCTCCATCCTCCCTTCCACCACCTGTCTATATTCCCTACACTTATACTCTCACTCTTTTCTTCTCATCCTTCCGCTCATCTCTCC
ATACTCCCCCCCTTCTTCTCTCTAACCTACTCTCTATCTCTTCTTATACTACTCTTCATCTTCTCTCTTCTATCATTCTACTCTCTCCTTCCTCTCCTCC
CTCCTTTCACCATCTCTCTTCCTCCCTATCCTTCCATTTCACTTTCAATCTTCTACTTCCACCCACTAACCTATTATCTTATTCCTTCACACCTACTCTC
TACTTTTTATATCCTTATCCCCCTTATCTTCCTCTTCTTATTTCTCTTCCCCAATTCTCCTCCTCCTACATCTCTTCCCCCCTTCTCTACTTCTTTCCGC
CCCCTACCTTCCATCCAGCCCATTTCATCCTCTCTTTCTACACCTGTC
>LE_HBa0159D05_SP6_261441 (trimmed for quality and cloning vector)
TTTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.89764
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0159D05
Clone
Clone name
hba-159d5
LE_HBa0159D05
C03HBa0159D05
P159D05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found