Clone Read LE_HBa0163P02_SP6_262299

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163P02_SP6_262299
Primer
SP6
ID from Seq. Facility
LE_HBa_163_P02-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1727 raw
Sequence
>LE_HBa0163P02_SP6_262299 (raw untrimmed)
TACTATGAGGTGTCAGCCGCTATTATTAATAGGGAGTGGCTTGCCAATCGAGTAACTTTTACCTGGTAGGCGTGAGGCACACAAGCTTGTGGTTTTCGTC
ACTGCTGGCAGTATTCAACATTTGTAATCGCTTACCACGTGTACATCGGCGCTCGTTTGCTAACATGACATTTCCCTCCTCCTTAAAAACGACACTGCTA
TTACCACCATAGTGGCTGCCTCTTATCCACACAATTATCGCTCTCTGATTGCATTATGGTGCTTAGTCACACTTCTTGCCTTTCGTGCTCCTCGCTCACC
ACCTACGGTTCTTATATGCCCGACGATATCGTATCTGCTGACCAGGTTGAGGTGGTATATCCTGATATTTACTAGGACACCTGCTCTCGTCATTACTTGC
TACTCTGACATCTCAGTGATAGTCCTGCTACGTTGTCAGATTCTTACTTCTCTGCATCCTCGAGACGAGACAGCATTGTCACCTCTTTGTCAGCCTTCGT
CTATGTTGCTCATCGCCGACGAACTATACTATTTTATTCGTGTGATGTCGGTACTTCCCAATATTCTTGAATCGCGCTTCATTCTCGCCTCTTCGTTCCC
CGACGCGGCTAACCCATCGCTCACAGTGCCAGAACTACGCTCACAGACAACACACATCGTCTGTCTCAGCCCCTAAATCGTGCTATCTACGTCGTCAATG
GCGCGACGCTCAAACTGTTTGGACAGCGCCGAACAGTACCATTGACATCCTTATGGTAGGCATACTCCATAATGAGTTGTTGCGATGATCATGTACTACT
TTCAGAATTCCGAGTAGATCGTCCTAGAAGCGACTGGGAGCGTCACCGACATTTTTGCCGACTTATCTTATTACTCCTGCTTTGTATTTGAACACCTCAT
ACCTAAGGCTGATCTGAACTTCAGAGCTTGTCTGGACGGTGTCGACCACCTAACAGATTAGTAGGCGGCGCTCTAAGGCGATCCGCTCGGCGCGGTTCTG
GTAATGTCGATATTCTACTATATCGAACGCGTCTAGTAG
CTCTCTCTCTAGACACGTACTCGTCGACTTGCAACTACTTCAGCACAACTATGACTGCACT
CCTGATGTATTGTGTTCGGTCGAGATTTACAGTGTCAATAGGCATGCGTAGCTCATCTTGGCAATGCCTTGGATCTCGTTCCTTATGATGGTCAGTTACG
ATGCTCCTACCGACCGTACAGCTCATTAGAAGTTAGTCTACAACGATTGCTGCGATAACCTGTCTAATGCTAGATTGAATGCTCACCGTGTGTGCTGTTT
GTACTTCGACCGTTGTTGAATGTGGCTCATGATTGCATACGCGCAGGATCCATGCGTTTGTGATCAACACAACAATTCGCGTTAGTATCCCTGGAATCAT
CCTGTTTGTACAGTACAACCGTACACTCGTCTGACTAGTTAATCATGCATTCATACAACTCTTTTACATACAACTATTCGAGTCTTCATATCTCTACTCC
TGCTATTCACGACTACGAACTGGCATTTCTAGCCGCAAGTTGAGATTCCGCCTGACTCAAACGTATTCACTACTAGGTAGTACAATCTCTGCAATCTCGA
TTTACGCTGACTATTCTTCAGTTGTTTGAACTCCTAGCAATTGCCCGTTTCGTCTAATTGCTGCATGCGTCTCCAGATTGCCACCTATTCATGCATTATA
CGCATGACACAGTATAACGGCTCATTA
>LE_HBa0163P02_SP6_262299 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.02663
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163P02
Clone
Clone name
hba-163p2
LE_HBa0163P02
P163P02
Clone type
BAC
Contamination
none
Estimated length
94,336
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found