Clone Read LE_HBa0165F03_SP6_262532

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0165F03_SP6_262532
Primer
SP6
ID from Seq. Facility
LE_HBa_165_F03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1986 raw
Sequence
>LE_HBa0165F03_SP6_262532 (raw untrimmed)
GGCGCTCTCATACAACTAAGTCGTCACAACAGCTGATACCACTTATGACAATCCTGATAGTTGTACTGATTCATATCAGCAAGTGATGTCATAGCTCCCG
CTATTTTTAAAGAAGATTATGACTATGCCTGCTGATTCCGCTGACTCACTATATACACGTACATTGGCTTGCCGCTGCTATCGCTCTGACATTAACATGA
CACCTGATGTATGACGATCTGCGACACTCCACACCACATTGATACTACATGACTACACTTGCTCTGGTAAACGCATTCACCATCACGTATCTAACACCTA
GTGCATTGTTGATGCGGACTTCTGTCATACACGTCTCATTAATTCTAGCTGACACGATTGATATGCGCCATCAGTACGCGTATATAATATCACTGAATAA
CAATATATCTTCCTCTACTATATCCCTATGTACTATTGTGCCTCCTATGTTGATTCGACAACCTTCATAACAGTCGGACGCTTACTTTTATTTCTATCTC
TCATTGACGTTCTCAAACACTGACTGTATTCACTTTTCTTATATCAGCTGCAAATTGCTCTATATGTTGGGCTCGAATTTTACTCATGCGACACGAATCT
TGTATACATACCTTCTGTTCTTGAACCTGTCGATACTGCTCCTTCTCCTTGTATTTCTCTCCTCAGTTCTTACTACTTATAGTAACACTACCTTGCCGCT
ATTTATCAACTCTCAGCATACTA
TTCCTACACTGACACAACTACTTCACCCTGGTTGGCGTCCTCGCATTCATCCTCTCATACCACAGCGCCACCTGTTT
CTCAAATGTTTACATCCGCTTGATAATCCAACTTCCTCTCCATACACGCTTACTTCTTACTTCTTCAACCTCGATACTATTCTCTTCCATAACACTCTTC
CACACACTCTGTAATCAGCTATCACTCGCTGCCTATGTATAGCCTACATATCACCTTGCTTGCTCACTGACTATTGCAAATCTGCATATACAATCTACCT
CAGCTTCTTGATACATTCTCTATGTCATCATCTGATATTACATCTAACTCCACTCGTCATACTATCCTCTTACTAACCCTACATACTTCGATCTCAACAT
ACATAACATTTAATTACTCTCACACTTATATCATCTCTCACTACTATATCAATGATTCCATTCTAACCATACGATACAACTTACGTGTACACTCGACAAA
ATACATAGCTCCTCTCTGATCATACTTTCTATTACCACAACTATTACATCATAGACTATATGATACCTCACTACTATAATCTCTCCTAACACATCACTAC
TATCCTGTATACTTACCTCAGTCATTCTAGTTTTCTCTCGCACTATCATTTCTCTTTCACTACATTCAATTTCTCCTCCTCTCTCTTCCACATTATATGT
TACTTCACTTACACACAATCCTCCTACTCATTCGCTCCTACATTCTCACTTACCCTCTAACGTTCGATGCACTCATTCTACCATCTCAACAATCCGTCAC
CTCTCATCACTCTCTCCTATTTCATTCTCCACTTACTATTCCTGTCTCCGACCTCACACAATGATAATCATCCATGATCTCCTTCATTCATCCTCTAATG
TTATCTTAGTACCATATCTCATTGACCATTGTCTCACTCATCTCTATATCACATTGAACTATCTATCATCTATACACTATCTCCTCAATCCTACTCTATA
TACTCACTCATCGAATCATTGACTCCTCTACATCTTCTATTATCCTTCATACAACGCACTTCGCTACTCATTCCACTGTGTTCAATACTCTCCATCTCTG
AATTCTTCCATATAGATACCACGTTAATTCCTTGTTATCCTATCATACAGACATGTTGCTCATTACTCTATTATCAGATCATTGTAGCATTCTACACTGC
TTGCATTGCGATGTGTCCTGCTACTTACCTCATTATCATACGACTTAGTATGTTCTCACAACCTCTCTCATCTCTCTCTCTATGCG
>LE_HBa0165F03_SP6_262532 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.39716
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0165F03
Clone
Clone name
hba-165f3
LE_HBa0165F03
P165F03
Clone type
BAC
Contamination
none
Estimated length
102,599
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found