Clone Read LE_HBa0171F16_SP6_263354

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171F16_SP6_263354
Primer
SP6
ID from Seq. Facility
LE_HBa_171_F16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2333 raw
Sequence
>LE_HBa0171F16_SP6_263354 (raw untrimmed)
NCTTTTTTTACAACACACTCATCACTACTNCTNNNTNTNNNNTANGCTAGNTCTATGNTGGGGGTATCACCACTCGCAAACTACGCACTATCTNACTCTC
ATAATNCTNAGTGACATTTATCAGCAGCTATACGCTCTAGACACACTTCTCCATCACATAATNCCACAGCGAGACTTAGCACATACATCGATCGCACGTC
ACTATTCCACNATATACCCACATATATATGTTGTACACACTCACACATATCAGCTCTCCATACATACATATAGAATCACTCAGCATAGGTAATATCAGGG
AGGNCAACTACNTCGANTGATACTATACTATGCGCTACAGCTCTATTANTCACAGCTAGACCCTGTCGTCAGCATATCATATCATNACATCATCTTATCC
AGTGCTACGATNATGACNCACTNTGCTCTGTAATATCTACACTATCTACTTCTTCAAACATCTTACGAGATGAGTCTATTGTCATNCTGAACTACTAACT
CATGTCGAGATGATTACCCATGCATTGTACTAATACTCAATGCNACTATCACCTACACTTCTAAATCAGTCATACATATTGCTCACATCACATCCTCTCT
ATCTGCCGAATACTCTAGCAGCTACACAGATACACTCTATCACTCGTACTGNTAGCATCATTTATACACCATGANACATAGTAATGGTTATACACTCAAT
ATATGCATCTACTNACAATCACAATTACTCTCGCAATANACTACATCTATAANACGCACTCTTGCTGTATCAACGTCTCGCNTATNCTACTACATCATTA
TGCATCACTCACTNGAGCTATATCACTNTACTCTACCNATATTACTTTANCTCTCATCTCGAACTACCGTGACACGTACACTCTCACATCATGACAGTCG
ACTCATGCTATTCACATCCTTTCTATACTCTNAACTGATACGACATGTAGCACTCCTACTCTGCTNTCACTATATACCATACTACACTGCATCTAATGCT
ACATACACTCTCCTNGAATCATATATACCACATAACTCTTCGAACATATATATACTCATCGACNATCTCTATGTTACTACTCTGTACACNTCATATCATC
ATACACCATAATATATCTAATATCACACCTCCACTACTGATCANTNGTCACTGTAGATCTATACTATTATNCNCAANTACACTAATACTCTACACGTTGT
ATCACTCAGTCGCGTCATCNATTGCATATCNATGCTTAGATNACNATTACTATACTACATATATATATNCTACATNCACTTATCACCATACACACGTCAC
CACACTAACCTATCGTACATCATGCTACTTCTATATCCTGCAATCACATTGTCACAGATCTCTGAGATACACGATATACCATATACAGATCNATCGTACA
CTCNCTATCTCAACTCTTANAACACTATCTAGCGCTACATCTATCGCCCTCACTATATACATGCCATCCNCATANCATGCTGTCGCATCACTNGATCACG
ACTGAATAATNACCTATGATNCATACTACTCACTACTCGCAGTCTACACACAATCCTACTACACACGTGCANTCCTCTTATATCATGTATTACCACTCTA
ATATTACTAAACAATCATCATATTGCTCACGCTACATTGTCCTACTGATCCTTACCCAACGTACATACTGATATCCTATGTATCTCATATCTGCTNCATC
CTGCTCACGACGTATATAGTGGATCACTATTGCTTGCGACATCTATACTCCACTTACTACGACAGACCCTACATCACCTNGTACNTACTATACACCTCAT
ATATGCTACAATNACTACATACATCTGCTANCTATATNCTCTGTCNATAGCTGATCNAACATGATGCTACANACATACTGTACTGCTGANACTACTAACA
TATACGTACTACTTGATGCTAACTTACTATGAGTACCTTNCACGACTACTGCATCACATGTAATCTGATCAGATCTACGCTCATCANCCANCAGCTANCT
ACACGATACAGCTAAGCCCTACTATTACTCATATATCNACCTGACTCTGCACGTCTTTATCNANACTACACTNTATGNCNATCATACTCTAGCCACACAT
ACTATGACATCAATCTGACTACTCACACACANCNTGATACTATGTATCACGCTGCNACATCTGACACACACATACTGACTTCACAGCTCTCACTATCNCT
NCACAGACTNTGAAGTTNACTCTCGACNTCGTCATATGATATAGCCCNATGATCGTNCNACTCTACACTACATGCCTGCACTATGCTATGCACACTTACN
GACTAACACNACTCTACATCGTACTGTACATAG
>LE_HBa0171F16_SP6_263354 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.9915
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171F16
Clone
Clone name
hba-171f16
LE_HBa0171F16
C08HBa0171F16
P171F16
Clone type
BAC
Contamination
none
Estimated length
104,160
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found