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Clone Read LE_HBa0171J11_SP6_263434

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171J11_SP6_263434
Primer
SP6
ID from Seq. Facility
LE_HBa_171_J11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 2814 raw
Sequence
>LE_HBa0171J11_SP6_263434 (raw untrimmed)
CACATCATACATACACTATANACCATGTCGATTACGACACATTGTACAATAGCTACTATAGCACTTCACATTCTCCTACACACCCTGCTGTACATCACTN
ACCATGTTCTTACACACGCCTCNCTTGTAGCGCCACCTAACCGGTAAGAAGTGTAAGACTACGTANAATANTGCTTGCTAACTATGTACTACTCATTTAC
ATACATCGGCCGTCACTGCATCAACCATCACTCTCTCGGANANACTCTTATCTCACGCAAGCTGACAGCGAGCTCGTATCACACTCTTGTCACACCTCTC
ATAGATACTCTCTATCGACTACGCTACCATACTTATTNCGCTACACACTTCCTGCACTATGAAACAGAGCGTGACACATCCGACTACTGCTCAATTTGCG
CACTGCACTCACATCCATGATGCATGCCCATCAATACTACGATCTTATCATTAATCTCGCTAGTCGTCGATATGATGAGGAACAACTGAATAGATCAGAC
CTCCTCTAATACTATATACACTACATATGATCATGATACACGATACATACACACTCATACTACACTTACTGCTACCATCGTTACTCTCTCTTNCTATCTC
ACTCCTGCATACTGACTCGCCTCTCACCGCGCTATCCATACCTCTGTACAAGACTGCCACATCTCTTCTCTCTCTGACATCATCNCTACAATATACTACT
GATCACATCGCACGTCTCTTCTATTACTCTNCTCTCATACCATCATACACGATATTGATACACCAGCACACTACTATCACCCTGCTACACACATNACTCG
NGATATAACATCTACTTGTCAGATCTACGCACCACTGATCNATAACNACTAGCAACTGCATCCAAGAACGACCACTACCTACTCGACAGTAGCAGCATCA
ACATCGACCTGCTGCGCTCTGCATGAAGTGCTCAATGATACCACGATCTCCTCAATTACTCATGCAACGAGACTCACTCTATCATACATCACGCGCCACC
GCTTCTATGACCACTCCTCGTGCTACNACTATACACCTATTGCACTACTTACAATCCGATGCATATATGGCTGACTCGACATCCTGACACGTATGGATCA
TATCAGAGAACTAGCGAANCATGATACTCGCACATACTGCACCNCACGTACAGATCGATCTTCACTCTACTGCATACATAGCAGCACGACTACTCACNAT
CNCATCGTCATTGATCATAGATACTATNCTAGTCTCCAATCTCACACACATGCTGCACTTAGATNTGTAGCTACACCAACCTACTCTGCCTGANACATAG
CGTCGACATCNTGTGTGCGTGACTCACTCGTATGCTGCTATGTATGCGATCACTGACACTCTAANTGCATCATATCTTGTATCGTTCACTAGCACATCGC
TACTACACNCACATACGCATCGAACTACTGACTTACTACTGTACTGTGCATCGCTAAACTTTCATACCCTACATCTCTACCGCTCACACCCATACATACC
GAATACGACTTCACTCATACGCTTCACTCTCATCTACTCATCACTCACGATATTGCTANATATATATCTACTGCTCATGCACACATGACAATCTATACTC
GATAACTTGACATGTCTACTCATTACGTACTCTTCATATCGCTCTCTACTGCTGCTCAATATCGACTGCAATCATGCTGCACACAACTCTCTCTTCTATC
ACGCCCATACGCACTATCATATGTCTGCCTACAGCATCTACCTACTAACTCCANACGTNTACTTACCATACAGA
CTTGTCGATACNCACACATATCACAC
TTCACTCATCCATGCATCTCATCCTCTAATTGCAATCATTCAACACACTATACTGCATACGTGACATGCAAGCTCCTATGTCTACTCCTAGTACTCTCAT
CGGCTCACATCACTGCTATCACGTGAGACTAACTACCTCAAACTACATCATGTACACACACTCCTTATACTTGACATTTGCTGTCCTATCTACACCTATC
TACTTACCTACTNGTCTGCTNACTCCGTGCACTCTACTCTGCTCCCACTCGATCACTATCATCCTTGATCGCTACATACTCAAAACTCAGATCCTTACAC
CTTATCTTCTACATTGCTTACTGACACTTGCTGACACACGCTCTTATCGATGCCGATGCTCCTCATACACGACTCACTACATGCGAACTATCTCTCATAA
TCTAACGCTCCATAGCAATCGATCTATGATCGATTACTACTGACACTACTGCACACTACTCTCTCCTAGAACTAGATAAATCACACACAGAACACATCTC
ATATACACTGTACGTATACNTCTCGTTCGACTACCTATATATGTATGTATCACACTATATTATCCTCACGATACACATCGCATGCACCATTCTCCATGCA
TTAGATACTATACTCGTGGCATCTAGCATCGAACGCATACGACCTTCCTCCATTGAATGCAATATCATACTGTATTCACTGCATCTACTTATACATCGAT
TCTTGTACTCTACGTCATTATACCCTATCTGATATACTGATACTGTCCCTCGCTTATCATCACTAATGCTTCACTCTATACACCATGTGCTACTCTGCTA
ATGAAGCTACTCTACCCTATCACATCTACTCACACATGCATCACACTCATNTATATCACGTCTCATTCTCGTATATAACATCTACATGAATCATAATTGN
ATCTCNACTCCATCTTGCCTCGCATTCCTCATACATCCTCTACTCACCTCATTCTCGACACACGCACACACGCTATCGGACTGTACTCTCCTACACGCAA
TATGACACACATCG
>LE_HBa0171J11_SP6_263434 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.83173
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171J11
Clone
Clone name
hba-171j11
LE_HBa0171J11
P171J11
Clone type
BAC
Contamination
none
Estimated length
126,651
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found