Clone Read LE_HBa0171J15_SP6_263437

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171J15_SP6_263437
Primer
SP6
ID from Seq. Facility
LE_HBa_171_J15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1778 raw
Sequence
>LE_HBa0171J15_SP6_263437 (raw untrimmed)
TCTATATAAAACTACGCTGCATTTGAGATGTACTGCTAATTATGTGCTACTGAACACAATGCATGTACCACAAACTATATGCTTATGAATTATCAATTAT
ATGAACAATGTTATATCATGCACTCATTAATGCTCTAATAGTTCTCAATACACATATGCAAGAAGGGTGGATACATATACCCNCTGCATACTTCTTCACA
TCCCTAGCAATACATAGTGTCATATTATCATGATCTCTCATGCTCCATATATCATGCCTCCTAGCAATCGCACTGTTAATCATAGGAGAGCATACTCCTT
CACCNTATATGTTTTCCTCTTCCTCAGTCAGTAGCACAACAACTCTTCACTGTTATACTTATACTACGTATTTACCGTCAATCAACTCTACTGCATACTC
ATTTTTACGCTTTACATATATACTTTCTCTGCCTCCATGCTCATAACCTTCGTTATGACTATCCATAACACAACTACTCTGTCTCTCACAATCTCTAGAT
AATCACACTATTACCTTTAACAATCCACTTGTACAACCCAGAATATCAATCCACGCTGACTCTTACACACAGTCCTCTCATCATACCCATAATCCACTGA
GTCTCTGACATCCTTATTCTGCTACTACTCTCACTATCATTTGTGCACTTGCGTAGCATCGACTTTCATTCTTACCATACACACTTTTCCATCATATCTC
TCGATCTTTCTTCATATATATGCATACTCACTCTTAATTACATTACATCTTGACTGCTCGCGCACTACACACCTAACCCCGCGACTCTATCGCATCTACT
TGATATATCTTACTTCTCACTATGTCCACCTTCGGCACATGACTAATAATACACATCACTACTAGCTTTGTTTATATCTACTATTACTCTCTAGAGCTAC
CTCTCATCTATATTATTGCTTAACTCTCGATCTCTCATTACATATACGCCACGAGCCACTCGCAACTCAAAGATCATCCATACTATCTCACATTACCTGA
TAAGTTACCATACTACATATCCGTACTCTTCACTCACGAATCTCTATCACTATACTTCCTATCTACATTTTTCGTCTGATGTCCATCCACTACATGCATC
ATCATCTATCTCAACATTCTAACCTTGCTTCTATCTACTCATTCTTGACACTATCAACTCTCCACTCTACTGCATACTCTTATCGATTTATAGCTATTCA
CTTACTCTCTATTACACAGCTCCTCTTTGATACGTGACACTCCACATATACATTCTATGCTCACATCTCCATATCTACTTCTCTTCTCACCTCGACTCCA
CTGATTCATATTTGCTAAGTCATATCTACACACTATCGCTATCACAGTATGTGTCACTCATGCTTCATCTCGACGTATTCCTCTACGCATTGCTTTTACT
ACTTATCAATCTCGGTATGCCATCCANCTCGTATGCTTACTACATCTACAACTACAACATACTCCTCCACACTTACTCATATCCTCTACTCCTCACATTA
TATCTGCACTATACAGTAATACTTGATCACACTTCTCTAACACCATTACATCACCCTACTAATTCTACGTCATCTCATTCCAACCTACTCTTTAGATCCT
CTTGATGTCTCATATCCCTCACGNTATCACCCTACAGACAATCGTTATCTCCTATGTCACTACATATTCCTGTTNATCATCATCTAACTNCATATACCTC
ACACTCATTCTTCATCTCGCACACATATCTGACAACTNTTCATCACTGACTCTTTCTGTACTACTGCTCGTACATATA
>LE_HBa0171J15_SP6_263437 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171J15
Clone
Clone name
hba-171j15
LE_HBa0171J15
P171J15
Clone type
BAC
Contamination
none
Estimated length
100,574
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found