Clone Read LE_HBa0171P22_SP6_263570

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171P22_SP6_263570
Primer
SP6
ID from Seq. Facility
LE_HBa_171_P22-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1711 raw
Sequence
>LE_HBa0171P22_SP6_263570 (raw untrimmed)
TACATTCGTGCGATCAGATGCAGCACCTATAATTGCGAACTAACAGCTGATATACTAACTGTACTTGATCAGACTTGTATACATCACTACCCATACACAT
CATACNAGCATCACCTCGTGCCAGCTTATACGCATACACGCTCATTATCTACTTACTTCGTACTCATTCCTACTACTCGCATAAGAAGGATAACACCCTC
AATATGCATATCATGTAATCTTTAATCATCATACACTCCACTGAGGATACATCGTATCCACCCTCCTTGTCATCATGCANATATCTCCGAGCATCTTTTA
TTGTCATACAAGCGCGACATACAAACATTATGCACTTGNCTTGTATCTTCCCTCATCCACTATTCACACTTTATTAANCCTACTACGCGCTCTCTTTACT
TACATCGCTNCTAATGCTCTCATTATGACACATCATACTGTGACACAATAGTGTACCTAATATGCCTACTCTACTTATTACTTAACTCGACTATGCAGCT
GAATAATACTATACTACATGTCATCTACCGTAGTCACCATGTCTCTTTACTCTAATTACGCTCTTATANCTTATACGCCTCTCTGTATACATAAGTGATA
CTTCCTAGATATTCTGTTCATACGTCTAACATACGTCCACGCGCATCAGCCTACGCCACTAGTGACATACACATAACGCCTAACACGACGACACTATGAT
AAGCACGACCCTATNTGCATACATGAAATAAATTGCTCATCATACTATGCAGCTTTCTACACACGACTACTTACACTCGNTCTCACATCATGACACCATA
TATCAGTCATCTACGATAACGAGTCTCNGAGTACTATCTCTCNCTACTTGCATCACATCGAGTATCTGTAATCTCATCTCACAATTGATTGCGCAGACGC
TCTATTCTGCACTTCCTACCTTAGTCTCTCACTCATGTCATATCACTGTCAATATAATCATCACACATAGTGATTCACTGTCCGTGATGATAACTCTACT
GCCAATATGANCTCACCGTCGGTTCATACTACTCATCTCGATACATACGAATCTACATACGATTATCTTACATAACATGACACTTCGTAAGATTAGTACG
CCTGTTCACAACCTGCCTACGGATATTACATATAACAAATAACTACCTTGTCTAACNCTCACATCAGTACCTCTCTTCCTACATC
ACACTCACATCCTCC
ATGTATATACGACTTCACATTAACTCTTCTTGCTACGCACGTACTACTATCGCACCTTACACAACTATATACTCTGACTATACATCAGAACANCTCACTA
CATTCTATACGATCCTTCACATCTTTCTGACCTCTTGATCCACTCATATCATACCGTATTAATATCACCGTCATACTAAGCTATACTATATATGCGTACT
TCGTCTAGTTTATCATAATCTAGAGTAATATGCTAGTCCTAATCAACACTGTCTACAATACTGCCACATCTCAACACCGAGATACGCATAATCAACACTC
TCACAAGATGAGTTTATGACATACTAGCATATANTTCTTCTCTACTTACACCTATAATAATCTCAATCAACACGTGTGCACAACACACACGTAATAATCG
TTCACGTTTGACACGCTCTCGANTGATCTAGCACTTACATATCAAATTGACGAATCGTAGCTCTATAATCAGACATACGTTCTCATGAGTTGCTCGCTTT
ATTTGCTTTAN
>LE_HBa0171P22_SP6_263570 (trimmed for quality and cloning vector)
AC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.699054
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171P22
Clone
Clone name
hba-171p22
LE_HBa0171P22
C02HBa0171P22
P171P22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found