Clone Read LE_HBa0175M04_SP6_263828

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0175M04_SP6_263828
Primer
SP6
ID from Seq. Facility
LE_HBa_175_M04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
35 trimmed for vector and quality, 1015 raw
Sequence
>LE_HBa0175M04_SP6_263828 (raw untrimmed)
NGGAATTCTTNNNCCGATATCTCATTTTGGTTAGGCATCTTGGTGGCAAGCTCCCCCTTTGCTGCCGTTGATAGGGCATTTAGAGTCCCCAAGACTGATC
TGGACCAAAAGCGTCACAATGCATCATATATGCACTTGTACCCTTTTCCTGATGCATTGAGGCACAACCCCAGATTGACGACAAGACATGCACGTCTTTC
GCCAGGTTCAAGCGTTTTGTCTCACCCTCTTCATCTGCGCCTGTGAACATCTCAAAGAGATACCACCCTCCATGACTACTCTTCAAAGGTTTTGCTGAAT
GATCCTTAGCCACGTCTACTACCAACTGAATAATTCCTTTGGGCCCAAGTAGGCACACCTTAGGCTCAACACAATGCATCTGCTACCGGCGGAAACGCGG
GGTCTGGGACTATACCTGCTGGAGGCAGTGCCTCC
TCTCCATCTATGTCCACTCCTGCCTCTGCATCTCGTCGTCAATCTGCTCCATCAAGGTCAGCACT
GCAGACTAATGAAAGTGATGGAAGCTCTTCACAGCGCAAAAGTAAAGCGGATTTGAAGCCTGCTCATGAAAATCGCACGGGAATTCGATCAAAAGATCCC
GCTCAAATAAGATCTGTCTAGACAAACGCCTTTTAAGAAGACCCTGTCGATAGCGAAAATAATTCCTAAGGAATCCGATTCACTTTAGTAAATAAGTTAC
CCACCAGAATATAAGGATAGTTTTACTACCCTACAATTTTTGAATTTAACACTAACCAGAATCTTAACATTTAAAGAAACGAATAAACCTTGATCAACCT
TCCACAAAAAAACCAACGTGGGGGACCTTTGCGCCCTTCCCGCTAACACAGTCCCACAGGTTTACTACTTATAATTCCCCCCCCCCCTCAAAATCTTTAT
TGACCGGCCCCATAATGTTACATTATTCACTCCTGAAAGAGAAAATCCCTCCATTAACCCAATAATATAATATTCCCTCCCAAACTTTACTCAGTCTTTG
GACGAGACCAAACTG
>LE_HBa0175M04_SP6_263828 (trimmed for quality and cloning vector)
TCTCCATCTATGTCCACTCCTGCCTCTGCATCTCG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.563612
Expected error %
0.723576
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0175M04
Clone
Clone name
hba-175m4
LE_HBa0175M04
P175M04
Clone type
BAC
Contamination
none
Estimated length
71,420
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found