Clone Read LE_HBa0180A02_SP6_264583

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0180A02_SP6_264583
Primer
SP6
ID from Seq. Facility
LE_HBa_180_A02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1409 raw
Sequence
>LE_HBa0180A02_SP6_264583 (raw untrimmed)
TTCACGCCCTGAAGCGCATTTCCCGTGTGTCACNCGGAGTGTTCGCTAATCTGGACTGCTTATTATTGTGAAGTTCAGTTATCTATGAATTGTCTACATG
TGCCCGCTTCGCTCTTAACCAACCTTTCAGTGCACTCGGTGCACCACAACCGCTTGGCATCGTATTCTCATGATGTAACTACGTGCTTTGCTACGGCACT
ATTCTCCAACGTTCGTCCAGATTTGGCCGGATACTATTCGTAAGTAGCGACTCGCGGTCTCTATTTGTGATCTATCTCTGGCCAGCTCTCTTGGCACGCT
ACGACATCTCTGCATACTGCGTACTCGTGATCTTCACTACTGTATCCAATCATACACCAATTCTGACTGCTTTTACTTATTACAACTGCCTCTATCCTTC
TGCTACTGCTACATTCTGCATTCATTGCTGTTGCGCTACCTTTACCTTTTTAACATCTCGCTTGCAAACCTCTCCTGTCTATATGCGCTCTCCACTCTTC
ACTTTTCCTCACGTATCATATTTTCACTTCTGCATAACCTTCTTTTTTTCTTCCTAATTTCTCTTGTTTCCCCTTCTCACATTATATCCCTTTGGCCCTC
TCTCCTTTCAATTTGTTTCGATCTCATCATCCTTATCTCTTCTTCCTCCTCTTATCTTATCCCCTTCTCTCCCCTATACCATCTCCTACCATCTGTTCCT
CCTCCTCCTCCCCTTATCTCCTATATACTTTACTACTCATTCCTTTCATATTTATTTCAATTTTTTCTTATCTTACACTATCTTCTTCACACTTACTATC
TCCCTCTCACCTTCCCTCTCTTCCTCTCACGCATCCATCCTTCTATTTTCTTCTCACACTCCCTCTCATTCTTCTCACATCTTCTCTCACTCACTTCTAT
CACACTCCTTTTCTCTCCTACCCAATTACCTCCTTCTCTTACCGCTACTCCTTTCTCTCTAATCTACCTACTTCTCTTACTATCCCCATCTCTTTTCCTT
TCTCTTCTCTCTTCATCATCTTACTTTCTCCCTCTCTCCTCCCTCTCTACTGCTTCACTTCTCCATTCATCATCGTATTGCTCATCTCATTTTTCCCTCC
AATTCACATCTTCATCTCTTCTCCTCTCTTATTACTTTCTATCCTTCCACTTCTTCTCTCTTCTTATCCCATTCCTATTACTTCCTCTCCTCACTCACTC
TCCTTCATCTCTCTTCTACCTACTCCTCTATCTCCTCTCTCCTTCACCATCTACCCTCTCTCACATCTCTTTGCCTCTCCTTTCTCTCTTCTACTGCTCA
ATCTATCTCTCTCTTCACTTATCTTCCCCTCTTATCGTTCTCTTCTACATTCTCCTCTCATTCTCTTTCTTCATTATCCCTATTCTCTTTCTCCCTCTCT
ATCTCTCTA
>LE_HBa0180A02_SP6_264583 (trimmed for quality and cloning vector)
TCG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.04247
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0180A02
Clone
Clone name
hba-180a2
LE_HBa0180A02
C07HBa0180A02
P180A02
Clone type
BAC
Contamination
none
Estimated length
106,771
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found