Clone Read LE_HBa0183I10_SP6_265138

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0183I10_SP6_265138
Primer
SP6
ID from Seq. Facility
LE_HBa_183_I10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
619 trimmed for vector and quality, 976 raw
Sequence
>LE_HBa0183I10_SP6_265138 (raw untrimmed)
TCGTTTNNGGGCTGTCTTCGGTGAGTAGAGCATAAGCCATGTGGGCTATGAAGAAGTTGAAAATGGATTGGAGCAAAGCTGCAGAACAACGGTTAAATGG
GTTGAATGAACTCGATGAATTTCGCTTGAAAGACTATGAAAGCTCAGTCCTATACAAAGAAAAGATGAAGAAGTACCATGACAACATAATAGAAAAACGA
GAGTTTATGGTCGGGGATTTGGTGCTTTTATTCAATTCCAGGTTGCGCTTGTTTCCGGGCAAGCTCAAGTCCAAATGGACTGGTCCTTACTTGGTTACCC
AACTATTCCTCATAGAGTAGTTGAGTTGGAAAATAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATTTCGGGCATACTGAATCA
GCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATTAAGTGTCCCCAGCCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAA
CCCAATACTTATAGTCTTTTTAGTAATGGTAGCAGTTTTTTACTAATGGGTTAATAAATTTGCAGGCACATCACCAGGATATTCTGCAGAAAATTACTCT
GCAGCAGTCACTGACGGATACAGCGACGAACCGTTGCGCCTGCGAGGGACATCGTATGCATCCATCGGACCAGGTACGTCTTTATGTTATTTCCAAACTA
GAGCACCCACGATGGAACCAACGACGGGGCCGTCCAACTGCCACGGACGTTCTCGGGGGATCTTGCGTCATTAATGGAGTGTTCCCCAACCCATCCGGGT
TGGATTTTTTATTAAAAGGTCCCTTTAAACTCCCCAACCCCTGGTTTCCCCCTATTCTCTATTATTTCGCCAATTTTCTTCTTTTGTACTTTCTGAGATA
TTCCGTGTTTGAAAGGTTTTTGGTCCCCAAAAGTTCTTCCATCCTAAAAATTTAATGTGCTGACTGGATGTTCTTA
>LE_HBa0183I10_SP6_265138 (trimmed for quality and cloning vector)
GCCATGTGGGCTATGAAGAAGTTGAAAATGGATTGGAGCAAAGCTGCAGAACAACGGTTAAATGGGTTGAATGAACTCGATGAATTTCGCTTGAAAGACT
ATGAAAGCTCAGTCCTATACAAAGAAAAGATGAAGAAGTACCATGACAACATAATAGAAAAACGAGAGTTTATGGTCGGGGATTTGGTGCTTTTATTCAA
TTCCAGGTTGCGCTTGTTTCCGGGCAAGCTCAAGTCCAAATGGACTGGTCCTTACTTGGTTACCCAACTATTCCTCATAGAGTAGTTGAGTTGGAAAATA
AGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATTTCGGGCATACTGAATCAGCGAATGAAGTGATCGAGGCATACCATCTTGATGA
AGTCTGAGTAATTAAGTGTCCCCAGCCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATAGTCTTTTTAGTAATGGTAGCAG
TTTTTTACTAATGGGTTAATAAATTTGCAGGCACATCACCAGGATATTCTGCAGAAAATTACTCTGCAGCAGTCACTGACGGATACAGCGACGAACCGTT
GCGCCTGCGAGGGACATCG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.983086
Expected error %
0.052285
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF79809.1| Score 111 E Value 1e-24 Identity 61.40% Align. Length 346bp (55.90%) Frame 2
T32E20.9 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD23707.1| Score 111 E Value 6e-26 Identity 57.80% Align. Length 403bp (65.11%) Frame 2
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||G84476 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0183I10
Clone
Clone name
hba-183i10
LE_HBa0183I10
C03HBa0183I10
P183I10
Clone type
BAC
Contamination
none
Estimated length
35,127
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found