Clone Read LE_HBa0092H05_SP6_26840

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0092H05_SP6_26840
Primer
SP6
ID from Seq. Facility
LE_HBa_092_H05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
570 trimmed for vector and quality, 928 raw
Sequence
>LE_HBa0092H05_SP6_26840 (raw untrimmed)
GCCGGGTTATGAACCAATGGTTTCAATCCTTGGATCCATATCGACCTATGTTACTACCACTACCATAAGATTGTTTCCCCTTGGCATTGGAGGGGAACGC
GAGCCATGTTACAAGCCCCTGGAAGAGACAGGGTTGTATTAGGATTAATAGGAATCTGAAAGGGAATGCCACCAGTTGCAATAACACAGAGACAAGCAGA
GCCATTGCCCATCATTGTTCTCAGTGCATTGCAGCATCCAGGAGATGGTGCAGCCGTTCCGTTGCCGTTGGACAAGAAATTCAAGCAAGGAGTAAAACTA
GTCAGCATTGTTGCTGTACATGGAGATGTCACAATTTGGGCATTAATAGGCAAAATTGCTAAAACAATAATGCAAGAAAGGAAAGAAATAGAGTAATGAA
AAGCCATAGTAACTAATATGAAGTTGTTTTTTTGTGTAGTTATTTTTATGATATGATTGTAATTTGAATGGTTTAATTGGTGGGGAGAAGTAAAGAGGGA
ATATATAGAGGGAAATGTAGGTGAATGAAGTTCAACTACTTTAACAAACTTCTCTTTTGGTCTAATTTTTTCAATAGTTTTGCTGGCTTGCTTGCCGTGG
CCTAATTGTTGTTCATTAACTCCGTTTGAATTCATCTGATTCCAATATTTTTTAACGAAATATAGAAGAAAAAATTCTCTAATTTCATAAAACATTAATT
ATTGAAGTTGTATTTTGTATGTGGATATCCCTTGTTCAGTGATGATTATTTATTGCGGGACATTTGTACTACAAAGTATAGTGATACTAGATTATATTAT
TTTACATCTTTTTAACCTATAAACTTATTGAACATATAAGTTCAATCACGTTCGACATCTAAACATCTGATTTTACTACCTTATGATTTTTATTTGTTTG
TATTTCTATTTTGATACCTGCTTTGTAG
>LE_HBa0092H05_SP6_26840 (trimmed for quality and cloning vector)
ATCGACCTATGTTACTACCACTACCATAAGATTGTTTCCCCTTGGCATTGGAGGGGAACGCGAGCCATGTTACAAGCCCCTGGAAGAGACAGGGTTGTAT
TAGGATTAATAGGAATCTGAAAGGGAATGCCACCAGTTGCAATAACACAGAGACAAGCAGAGCCATTGCCCATCATTGTTCTCAGTGCATTGCAGCATCC
AGGAGATGGTGCAGCCGTTCCGTTGCCGTTGGACAAGAAATTCAAGCAAGGAGTAAAACTAGTCAGCATTGTTGCTGTACATGGAGATGTCACAATTTGG
GCATTAATAGGCAAAATTGCTAAAACAATAATGCAAGAAAGGAAAGAAATAGAGTAATGAAAAGCCATAGTAACTAATATGAAGTTGTTTTTTTGTGTAG
TTATTTTTATGATATGATTGTAATTTGAATGGTTTAATTGGTGGGGAGAAGTAAAGAGGGAATATATAGAGGGAAATGTAGGTGAATGAAGTTCAACTAC
TTTAACAAACTTCTCTTTTGGTCTAATTTTTTCAATAGTTTTGCTGGCTTGCTTGCCGTGGCCTAATTGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.961803
Expected error %
0.48445
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g22620.1 Score 108 E Value 3e-24 Identity 17.50% Align. Length 308bp (54.04%) Frame 1
68416.m02856 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g48140.1 Score 90 E Value 1e-18 Identity 14.00% Align. Length 299bp (52.46%) Frame 1
68415.m06026 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1 (Accession No. L43080): an Arabidopsis member of a conserved gene family (PGF95-099), Plant Physiol. 109 (4), 1497 (1995); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM44945.1| Score 108 E Value 1e-22 Identity 17.50% Align. Length 308bp (54.04%) Frame 1
unknown protein [Arabidopsis thaliana] gb|AAK59510.1| unknown protein [Arabidopsis thaliana] dbj|BAB01476.1| unnamed protein product [Arabidopsis thaliana] ref|NP_566713.1| protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_469964.1| Score 98 E Value 1e-19 Identity 14.40% Align. Length 332bp (58.25%) Frame 1
expressed protein [Oryza sativa (japonica cultivar-group)] gb|AAO37995.1| expressed protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0092H05
Clone
Clone name
hba-92h5
LE_HBa0092H05
C03HBa0092H05
P092H05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found