Clone Read LE_HBa0094B04_SP6_27318

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0094B04_SP6_27318
Primer
SP6
ID from Seq. Facility
LE_HBa_094_B04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1089 raw
Sequence
>LE_HBa0094B04_SP6_27318 (raw untrimmed)
ATGACGTCTATACTCGTGCTGCTCATAACAGGAGCTTTCAAGTCTTTTGCTGGAACCGCTGCAGCTCCACCGCACACGTCGAATAGGCACCCCAAGTTAC
CCTGAGAAGTTTCCTTCTCTGCCTGCTACCGTCCTCTCCATAGTTATATAGTTTTCGATTCTCAGGCGTTTGCAACACACTGTCTTACATATTGTGATAT
GATCAACGAAGTAGCTAACTCGTACGTTTGATCCGAGATTGATAGAGCGGGAAGCATCAAGATCTGGTGCTCTCTGAGATGATGATAAAGAAGACGTGCG
CCAGCGACCGGACTGAAATATAACACTGATTATATGTTGCCCTATCACTGACTTGGTAGATGATGTACGCGCTGATCGCTCACTGCCTTTACTCTTACTC
AGATATCGTGTCGCGTGAAAGTGATACGAGA
CATCTTAGCGGGCGCAACGCACATAATGTCTATACACGCTCCTGCAAGTCTTGCTATTGACTCACGACC
AGTGACCGGTCGATCGCAATCGTTTCTCTACGGGTGTCGAACGTCTGACACTCACATTAATCCTCCTTAGCGTACGTTACTGGCCAGTGGCCCGGTCACA
CACACAACTTCCTTCTGATTCTCCTACCGGTCTTAACTCATGATGCTTTTTCGCCATCTTTTAGACCTTCCGCGGCTAGTAGGTCAATTGCTCATCTTAC
GCATAGGTGAGCTTGTTTCACGACTCCATGTAACTTTCTTGTCTTTTCTCTACTAATTTTCGCACTCTATATTTGGGACTGAGTACAGGGTACTTGTTCT
CTGTGGGTCCATAGGATGCCTCGACAGCTGATCTTCTCCCCTTTATTACCCTCTACAACCACCCTTATTCAAGCGTTACTGATATCTCATATGCTTTTTT
TTATAAAATACTTTCTTAACTAATGTGACTTTCGACTTCGCGAGGTGCTCTTGATATCCTCTATATATAACAGTGAAACGTACGAGATATGGTACGTATC
TCTATTGATGAAGCGCCTCTTGCCGTCATCTCCTCGGATACTCTATCGACAGCGAAGCACTTATTCCTGTCTCGTCGCCGTCAGTGGGC
>LE_HBa0094B04_SP6_27318 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
6.61011
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0094B04
Clone
Clone name
hba-94b4
LE_HBa0094B04
P094B04
Clone type
BAC
Contamination
none
Estimated length
76,696
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found