Clone Read LE_HBa0185F10_SP6_277781

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0185F10_SP6_277781
Primer
SP6
ID from Seq. Facility
LE_HBa_185_F10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 989 raw
Sequence
>LE_HBa0185F10_SP6_277781 (raw untrimmed)
NAAAGCACATAGACATGGGAGGATTTGGCTCTGGACGGCAACGGGATGATTCTCCCATATCCTTTCAGCATACCCAGTATACATTCTATACTGATAAAGT
GTAGTTCGTTACACACTAATAAAAAAATATCTTTGATTGTATTATAAATTGGAGCACTGTGTACAAGATATGAATTAGCACAATTCGATTTCCCACGGCT
AACAATCTACTGCCCTAGATGCAACATGATCTTTCTTATGAATGAAACCTCTCAATGATCAAGACTATTCTCTGATAATATTGCATTTCGAACAACCTGC
TCCTACCATGTATACCACTCTACTGAATATACATGTGACACCTAATTACTTTCATATCTTTATTTTTGAGACCACTACAAGGCAGAATTTTCTTTTTGCA
TACTACTATGGATGGCTACCAACTTCTTGTATTTTAAGGATACACATGATTATGAAGAAAGGTATCATAAAATTAAAATGAAAGTGTAAAATTGAAATAA
GAGATACCGAGCAATT
CATCAGTACATTGTCTTTACGTAACCGGGACTAATGACCTCTGTTTGAGTTACAGATGAGTAATGCATATGTGTGAGTTGACAT
ATGGAGGCACTTGACATGTATAGTACTCTGCTTTTCATAATAAAACGTCCACCCTATGAGTTTTTTCTCCTTTTTACCCACTCATGCTCTAGGTCACCTT
AAATTTATTTTTTTTATACTTAACGTTTTTCTTACCTTACCCTGGATTTTTCACCTTTTGATTCTTAGGGTCTAGACTAAAAAATTATTTGAACGTTCTC
GTTTTTTCCCTCCCTCTATTTTCCATTTTCAAAGGAATCTTTTTCCTTGAAATAACTCCTTTCAGTATTAAACATTTATTTCCGCTCATTGGGAAATAAA
TTACTCTTTTGATTTTCTTAATGATCTTCAATTCCCATCGACATCTATCTCCCCTGTTACCCACCGTTTATTGCTATTTAATATCTAAA
>LE_HBa0185F10_SP6_277781 (trimmed for quality and cloning vector)
CATCA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.536993
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0185F10
Clone
Clone name
hba-185f10
LE_HBa0185F10
C08HBa0185F10
P185F10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found