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Clone Read LE_HBa0095C08_SP6_28142

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0095C08_SP6_28142
Primer
SP6
ID from Seq. Facility
LE_HBa_095_C08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1649 raw
Sequence
>LE_HBa0095C08_SP6_28142 (raw untrimmed)
ATTCATAATNATAGTANTAGATATGCGTATAGTCANCGTACGAGCCCGTCTCACGACANCTACACCAACANAGAAGCAAGCAGTNGAATCTGATATGANA
NGANGATGAACTGCTATCGCAGCAGNCGATATNCGTNGTGACAGAAACGCGCTGACATACTCATGCAGCGANCTCAAGGATATCTGATAGCGTCTGCCGA
GCGTGAGNAGCGATGATCACGTCATAGTGACGCATACGTCNACT
CATGCTCAGCACTGACTCAGACTATCACTANAGANACGTCGAGTACGCTACAGTAN
TNGAANTGAATGTCTGAGTATCTATGNAGCTAGTCAGTAACTTCTGCCCATGANTGTCAGTATGTATGTAAGACTNAGNCACTGCTATCTGTATCTCTAG
ANAGTCATTCACNTATNTGACCGCGTATATCGATATGTCTATATACTGTGTGTGAGTATCGAGTGTGTGAGTCGTTCTCATCNCNACACACTGAAANTAT
CTATATNGCATAATACGANTNANTNACATAATAGAGTCAATGCGAGCGACTNACATATACGTNAATACGAGTGCTCTACACGCATGCANACAGTAGANTA
CCAGATCGANTACGATCCGACTAGCANACATACAGCTCATCTCTTATCCTANCTAGCTCTACTAGCATNCATGTCGACTACATATCGCATATTATACGTN
ACTAGAAACGNGAACCCAGACAGTACAATNAGCACACTGAAGCTCAGCACTNAGTAGTNCGCTACNGNANACTGTCATGCTNCNGCCGTGTANAGTNGCT
GTGTCGTGTAGCTGGTGAGTNNGTACTCGGTNACTNAGNAGANAGCTGATCNGTGNTTTNAGNACGCGCCGTAATNCNATAGCATGTNCGGTNAGTACGT
ATNGGTATCATTGCTTGGTAGAGAGAGAAGTGTGCNTGCATCNGCANGACTANCTNCGAGTCACTGCATGTANCATGTCTCAGCGTGATCACTGTCATCG
ACGCAGTACTCTGACAATGACGCACTCTGACCGTCTAGATGGNACCTGTCAATNTATGCTCTGCACGTNCGATGCAGNAAGCTCAGATGCATCGGACCCT
NACTCTANCTCNCGCTATGCCGTCCCACGACGCTNGANGCTTCGCANGCTGTGATCNTCGTNNGTCACGCTACGCTGNTNACNGTNGTCGNANGACANAT
GCGCGACGNGAGCTCGTATGNGTTCGAGCACTCANAACTTCTGTATATGACGCGCCNTNAGCCGNGNGACNCATGCNTACTTTGGCCGATGGCTTACATG
CATGACATACTCGACTNGCTACNTGTATAGTGCTAAGCGTTATGAGCTAATGATGCANTGTCANTGTGTAGTCAGTGCACATGCTGCGCCTGCNTCTNGC
ANANANACAGTACNTGTCGCATGANCGNTAGCCCGAGAGTGTACTGTCTCTTCTACGTGCTATGCCAGTNGTCTNCGTGCACGTATACTNGACAGNANCT
ACATCATCAATGCGTCACTGCGCAGCATTCGCATGCGCTTNCCCTCGCTNCGCTACGTNAGATCTGANCGTNAGTCAGCTCNTNGATCGNATGANTGGAG
CTGTATGATTACGCATGCGCCGTGCTNAGCGNCTGCTTGCACNCNACTN
>LE_HBa0095C08_SP6_28142 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.83173
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0095C08
Clone
Clone name
hba-95c8
LE_HBa0095C08
C02HBa0095C08
P095C08
Clone type
BAC
Contamination
none
Estimated length
90,173
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found