Clone Read LE_HBa0095C18_SP6_28162

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0095C18_SP6_28162
Primer
SP6
ID from Seq. Facility
LE_HBa_095_C18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 874 raw
Sequence
>LE_HBa0095C18_SP6_28162 (raw untrimmed)
GTCCATTTCGTGAGGAGGAGAGGGCGCGGCTGCCACATACGCCACTTCCATCCTTCCTCGTTAAGGACTCCGAAAAGTCGATAACAGGTTGAATAGAGAT
ATACATGAACATGCACTAAACTAGCCTGCCTATTCATCGCTGACGACAATAGTCATTCTTGCCCATATTTAAACAGAGGACGATGCGCCTCTTCCCTCAG
GTAGACTGCTTGTCGTCCGACACTCGCGCCTATCACTGTATCACACACTCTATGGCATACGCATGGAGCCTAGACCGACGTTCGAATTATACCAGCATAG
CGACCTACTCGTCACTGTCACGATCTCTGTTTTTCAACTCGAGATCTCTCCAACTACCCCCTAGCTTCAGCAACACGTCCGCGCGACGGGATGTAAATGA
CATGAACGGAGAGAAGCGAGAACGCGCGGGACAACACGCGCGCTGTTGGGTCCTGGCACCTCGAGACGAAGGAACCTGGGATGAATGCGACTAAATGACT
CCTTGTAACTTAATGACCTTACTGGTACGACACCACACTCTCTTGTAATCTATTATCACTCACTTTCTAGACTGCTCGGTTTCCGTTCGGTACTGAGCTT
GTCGGTTCTTGGCACTTGCCGTT
TTGTGTATCGGAGCTACTTAGTGTGTCCTTGTCTTCACGCTGTACACACCCGCTCGGAGGCCTACGGGTCGTCACTC
TCACGTATCCAATCAGCCATCTCGTCGCGTCCGCAACCGCGGCCGCGACGACACGTCTCGCTCGTCCTGCCTCTGCCATAAACGTGGTTGCTCGCTTACG
ACGAAACTCTCCGTCATTACCGTTAGTCTCCGAAGCCTGTTCAACATCAGTGTACCTGTTTTGCCACGGTGACA
>LE_HBa0095C18_SP6_28162 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
8.23994
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0095C18
Clone
Clone name
hba-95c18
LE_HBa0095C18
C07HBa0095C18
P095C18
Clone type
BAC
Contamination
none
Estimated length
112,931
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found