Clone Read LE_HBa0096A08_SP6_28814

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0096A08_SP6_28814
Primer
SP6
ID from Seq. Facility
LE_HBa_096_A08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
98 trimmed for vector and quality, 750 raw
Sequence
>LE_HBa0096A08_SP6_28814 (raw untrimmed)
AAAATTTCGGATGCCAATAAAAGATGAAATGCTTATTTTATATTTCTTAATAACTATATTTTTATACTTAATATGATATTATATTTAACGATTATAACAT
TAAATG
ATATTTTGATTTATTTTATATATTTTATATATTTTTAATTTAAAATGCATAATATTTAAAAATTTTATTTACTTTCCTAAACACCATATCAAAT
AAAACAAATTTAACATATGAATTGATCAAGATTGATTGTAGTAAAATAAATTAAATGAGTACTATTGTAGTTTTCTCAAAAATAATAAGATATAAATACT
TCCGACTATCGTCTATAATAATATTTCTTTTATTTTAAAGGTTTTAGTATCCATATCCTCTGTCGGGGGAGTGAAAGCTTCAGTTTTGCTTTAGAACTGA
TGGAGGACGGGTTTTGGCTGGTGGAGAGCTTGCAACTTGTTCCACTTTAGCACAGATATAGTTCTTCTTATGCCTGACTGTGACATTCTATCACCGACGG
CTTTGTCCCTCTTCCCATTCGAGCAATGGCTGTTAAGTTGATAAGTGTTGCTCTGCGTTCGAAATTGCTTAATCTTCTAGTCCCCTTCTACTTTCTATTT
CTTGTTTCACTCTGGTGTGACGGCGGGTTCGTTCATTTTTCGACGCCGTGGCTTATCTGGCGTGCTAGGTTACTATATATGGTTGCTGAAGTCGACTATC
CTTGTCATACATCGTGATACCATGCCAAGTATCCTCGAGTGCATTTTTTT
>LE_HBa0096A08_SP6_28814 (trimmed for quality and cloning vector)
ATATTTTGATTTATTTTATATATTTTATATATTTTTAATTTAAAATGCATAATATTTAAAAATTTTATTTACTTTCCTAAACACCATATCAAATAAAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.683804
Expected error %
2.28163
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0096A08
Clone
Clone name
hba-96a8
LE_HBa0096A08
P096A08
Clone type
BAC
Contamination
none
Estimated length
75,101
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found