Clone Read LE_HBa0171P18_SP6_302069

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0171P18_SP6_302069
Primer
SP6
ID from Seq. Facility
LE_HBa_171_P18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 3837 raw
Sequence
>LE_HBa0171P18_SP6_302069 (raw untrimmed)
CATCCTTGAGAACANCTAGTAGTCATGACGACCCTNNNCGAGCTGATGTACNACATACCNTNTNTANGATTNANNCTGTGAGCATGATGACTGNCTANAC
NNGCTGTCAGNATNGAATNACCNTGGCAGCNTGATTAGTACACNACTNAGCATNCGCTANTNTANCTTTCNTAACNCATGCTNCTACTAACTNTCTCANC
ATCCTCAGTCAAACTAGNTCTNGCCATGCGTNNNCTNCGNCTGNCNGACTGCTTGCGTTATNTAGCTNATNCAACTNCGTATNCNACNAGTAGCACTGAC
GACTTACGACTATAGTGTCANCACTACNGACTGTANAGCTCTACGGNATCGCGTNGACTAATGCTATCTNACGTGTACTNCTCTATAGCNCTTCNGTCTN
GTATAGATCATACTAATCGCTGATCTTTAGTCTGTTNCGATGCGACGGAGATNGNANNAGAGCCTTATCCCNTACGCTGCTNTACACTGGACCCACNACT
GCATCATATNATCGCGTCGTANCACTGCACACTACTCANTNGTGTAGCNAGTACNGATTACNTAATCNTAACTATAGTGATGTNACTGAAACTATGCGTC
TGTACTAGTATCATAGTNGTATNANGAGANCTAGTCGCGACTGTGCACGAACTNANCTTACTGACTCTTA
CGTACTCACTCGATACGCACGATCTCTGTA
TCATNTGAACAATACGCGTNGATGTACTACTACTGAGGNACGAGATGCTTAGCGTATGCTATGATCTGCATAGCGACAGACNGNCGTNATGATCGNCTAC
GTGATGCANAGANCACTGATACTACGATACTACATGAGCGCAANCTNAGCNTCCTNCATCTACATATNCGTGANTGGGCANCTGAAGANGACTCAGTNCT
ACGATCGCAGTAATGANATGAGTAGCTGCGANTAAGTAACCTCATCGCGATCNNCACANAGCGTNGATNANCGTACGTAGATACTCCTAACNCGNCNCTN
TAATCAACGCATGCGNAGCAGCTGCTACTGATNCTGACGTCACATCANGCATANCTCGTTCGACGACTNCAGTCTACGANGCGTNGTATNCNTGATCAGT
CAGATGCAGAGCACANGTATATACATACTGACGCATAGCACTCGCACGAGCTCATANACGACTATAGTTAATCGTAGCTACACTGACTCAACGAGNAATA
TGACTGACGTCAGATGAGCTGATGCATGTNTGCGANTGACTGGATCACTCGTCACGACGCATTATTACTGATGANATGATACGTATGCCATATATANGTC
ACAGTCGCTTACTTGGATACGATCGATGNATACGTGACNTNGCTAGATCACNTGGACTCACATACTATGCACGTATGCTGCATCGACTACACACTGATCT
CTGCATACCACTAGACTCGAACTCAGCGATGCTCACGTACATGCTATGATCNCAGTACTGCGTACTATATGCACTCGCTNTCNATATCGTAGCTGCACAT
TACGACGACTAGCGTTATACTNTATCTACGTCTCAATGNCGACGAGAACANCATGTCGGCTAGTGTACCTCGCTTACNGTATCGCGCTAGTACTACANTG
ACTTGNCTGCGNCACAGNCACCTCNCGTGTGANGCACTACACGCACACATCATGCTGACATNCAGTGCATACTACACGCATAGCAGATCTTATGATGATA
CTACTGCACACNTAATAGCAANCGACTGTCAGNCGCNCNCTGCGTGTGCAAATACAACTACTNGAACGTTCAAGCTAGCAGTGCGAGTATGTATCATGTA
TATTGATGATAGTANCNTNTCACACGAGCAGCGAGCGCGATGCATTATAGTACGTGATCGANTNGATCTACTACTATCATNCTCATGCGCNGTATGACAG
ANCTAGAGACGTCAGCCACTGTCATCTATATGAATCCTCTATGAGTGACGCGAATCNCCACTNGCCTNCTGACATCGCTATCTACGCTCACAAATNCTCC
GTCATCTACGATTGACTGCTCATGCGATATTATGCTACCTACGACACGCATANTGACTCCGACTGTCGCACGCAGACGCAATGTGACTAACTGCCACTGT
GTACATGNGATACAGATTCAATTGATACAGCACTGNCACTGTGATANCTANTANCGATATGACTGACATACTGATAGCGACATGTCATGACTGATGTCAC
CGCTAAATACTGTGCANCGCAGTAGACTATNCTATANATGATGTNTACACAGATNGATCATCAGTAGACATATTAACGACAAGTATANNCNTATGTACTG
ACTGANCGCGATGTAGCGCAATANACGNATGTACGCNCACANCTGACATGCACACTATATCGTTGCAGCTACTATGCATGTCGAGCTTACAGCACNGANG
CACGATAGACNGTGAGTAGCTGCGTACAGCGCGTACACTGTACACTTACTGCANACGCAATCGTACTGTATACNCTGANCGANTGATANAGATACTANTG
CATGATGCANTAGACAAACGTGATCTATCTGANCTGTAGCGCTCTCTGTAATGAGAGNCATNGNTCNTATNATAGCTTTAACGCACTGCGACTATGTGCC
AGNANCTCTAGCGTCGTCTCGTAACTACTNACATAGTGATCGCGTCTGCCTCTCATATAGCTGACTACATCATACATGNTGCACGTACATGNCATATAGT
ATGTCTCAGATCTGGTNCCTGCGCAAANAGCACTAAGTGCTATGTATATGAATACACTGCATCACGAGCATAGCTATGAGCAAGAATCATCTGACGAGCA
CGTCGTAGCTACTACGACAGCATGCGTACTTTTNTGCNCAAGACTAGACTGCGCTCGGCATGTGCCTAGGATATGAGCTAGTCTACGCATGACTATGTCT
GATNGACGNCGTATCTTTCGACTGCAAGCACATATGACTATCGANTGCAGTACAGCTNGTCGTAACTGCAGCACATGCGANCGACTCGCATACNTGCATN
CATGACTATACTCGTNGTGTANCGTTNGAGNNCCGAACNGCACACGACATCATCATCCTNCAAATGCACGTCGCGTAACATGCTANCTAGCTAGANCTGC
TGCTGCTACTGCGCTACACGACGGCATCGACGANTAGATNATGCATNTGATATNATGCTACNCATCGNCAGCGATACATGACTGACAGNANCTACATGAT
TACTGANAGNGNAATGATNNTNATNCGTNGAGATACTGANNCNTCGNTCGTNACTGCTNACTATGCTGNACGCATANTCAGCTNCTANACCCTACTAGTC
GTACGCNATCGTCGCTGATGACGTCGATGACGCTNACCTTTATNGTCGAACGTAATCTAACGCNTGCTTCANGTACGACTAATACGCNAGCATAGNATGT
AGTNACGACTANGTAACATCATNCGATAGNCTAGACTGCTGCATTNAAGTTTNCAATGNTGCAANTCGCTAGCATGCAAGCCGTGANTACATCTGAGTAC
AGCTCATTGTAGNCTATGATCGTNCGACTACTGCTTGATCGCTATNCTACNGAAGTACGACGNANGCNCATGCTGCAGCTGCTACTGCTACGANGGAATC
AGACTNNGAATACNACTATCGTCGTACNGANTCGCCANTNACGNCTGCTAGGCCTNCANTGNAGCCAGTAGTACTAGCCGAACGAGTAGTNGCNTGATGC
ATCNTGACNAGAATNCTNCTGCACGTCAGCACTGNGTATCGANTACTNACGTTACTGACNGCCAAACNCTGNCTNGAACTATNACAAACNTACGANTGTG
ATGTNCAACGCTTCACGCACTNTAAGACTAGTACACG
>LE_HBa0171P18_SP6_302069 (trimmed for quality and cloning vector)
CG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.33519
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0171P18
Clone
Clone name
hba-171p18
LE_HBa0171P18
P171P18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found