Notice: If you try to use Google Chrome to access the SGN FTP site, please check this link to resolve connection issues.

Due to a hardware issue, SGN was briefly unavailable earlier today. We apologize for any inconvenience.

Clone Read LE_HBa0175I12_SP6_302306

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0175I12_SP6_302306
Primer
SP6
ID from Seq. Facility
LE_HBa_175_I12-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
592 trimmed for vector and quality, 1015 raw
Genbank Accession
Sequence
>LE_HBa0175I12_SP6_302306 (raw untrimmed)
NNCCGCGCTGCTGATTATTTTGATAAATATAGAACAGTAAAAATAACATTTTACTAAATTGTCTTACATATATTTACATGTAAAGGAAATACTAATTTAT
AATATTAATTGGACCATAAATTTATATGAGGGTCTTCTGAAAATATATTATCTTATTAATCTTATCAAAATATGTGATTTCTTTTCATTGTCCAAAGTTA
GGTTAGAGGAAAATATTATCGTAGGGAGAGTTTTAATTATCCAATTTTTAGCGTAGTGAAAGTTTACTGTAATTTTATAGTGAATGTAGTTATAATTTAA
GATGTAAAGATGTGAAACTATTTTAATGTTCTTACATATGATTTATTTGAACTCTCGTCTTATTTTTTAGATTATAATTTTTTAATTGATTGAATCACTA
CGAAATCGGTCATTGATCTGATAGAAATGAAAGGTATCACACAATGTAGTTCATAATATTAAGAATTTATGACCAATATCGTTGAAAACTCAAAATGAAA
TATATTAAAAATAGAATAATAGACTCTAACAATAAAATTATCTTAGACACAAACCCTATATAACCAAAATAACAATAAAATAAAACAAAAGCAAAAAAAA
AAAAAACTTAAGATTCTTAGACTATCAGATAAACATATATGAAAATAAATTTTAACAAAAACTTCAAACAAAACAAAACTTTTAAACACCCATCTCACAA
AGAAAATCCACATACTTGTTTCTTTTAACTAAGGCCTCAATTATCAAATACAAATTAATTTGGTCCTTCCACCTAGGTTAACCAACTCATCTGGCATTTA
ATTGAATTAGGGAACATCCAATTGGACCGATCAATGGGTGTGGGTACGAATTAAACAAAGCCCTTCCCTTTGGACTTTTCAACCAAGGTTCCCTTCTCTT
TCCCTTTGTTCCTCTAATCCATTAATATGTGTGGGAACCCCCTTTGGAATCGGTAAACAACCCAATTTCTTTTGTGGCCCATTAGGTTTCTCAAAATTTT
CCGGGTAAAAAAAAA
>LE_HBa0175I12_SP6_302306 (trimmed for quality and cloning vector)
TTTGATAAATATAGAACAGTAAAAATAACATTTTACTAAATTGTCTTACATATATTTACATGTAAAGGAAATACTAATTTATAATATTAATTGGACCATA
AATTTATATGAGGGTCTTCTGAAAATATATTATCTTATTAATCTTATCAAAATATGTGATTTCTTTTCATTGTCCAAAGTTAGGTTAGAGGAAAATATTA
TCGTAGGGAGAGTTTTAATTATCCAATTTTTAGCGTAGTGAAAGTTTACTGTAATTTTATAGTGAATGTAGTTATAATTTAAGATGTAAAGATGTGAAAC
TATTTTAATGTTCTTACATATGATTTATTTGAACTCTCGTCTTATTTTTTAGATTATAATTTTTTAATTGATTGAATCACTACGAAATCGGTCATTGATC
TGATAGAAATGAAAGGTATCACACAATGTAGTTCATAATATTAAGAATTTATGACCAATATCGTTGAAAACTCAAAATGAAATATATTAAAAATAGAATA
ATAGACTCTAACAATAAAATTATCTTAGACACAAACCCTATATAACCAAAATAACAATAAAATAAAACAAAAGCAAAAAAAAAAAAAACTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.872151
Expected error %
0.0274569
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0175I12
Clone
Clone name
hba-175i12
LE_HBa0175I12
P175I12
Clone type
BAC
Contamination
none
Estimated length
128,119
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found