Clone Read LE_HBa0099K07_SP6_31596

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099K07_SP6_31596
Primer
SP6
ID from Seq. Facility
LE_HBa_099_K07-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
123 trimmed for vector and quality, 771 raw
Sequence
>LE_HBa0099K07_SP6_31596 (raw untrimmed)
GACCCGAAACTGAATCCGGTGGGTGCCATCCTATTCACCTTCGAAATTAATATCGATATTCGAATAGTTAACGCTTAACTTCGATTAAAGATCAAAACTT
TCACCTAAGTTTATAATTTCGTATATATATATATATATATATATATATATATATATATATTTTGTGTGTGTTTTATTCTATGAGAATGCTGCTTTCTTCT
ACTTCCTCTGTCCATTTAAGGTGTCTTTAAGATTGGTTTTAAAGCTAAAAGTTTTCACCTGTAATACTTAATTGTTCAGAGAAAAATGTAGGCACCTATT
AAATTAAAATTGATATGATGTCTAATAGTTAAGCTTTAGTTGCATAAGACTCAGTGTATCTGATCGTCAAAACTATAAAATTTTTGATCTAAACAAGGCC
TAGTGCAGTTAATCTGGGAGAGAGTACTATGTTTACTGCCTTTGCGAATTTGATATGATAATGCCTCGTATCAGGGCTCTGGTACCGCCCTACCTCGCTA
CTATTTCTCAAGTATATGGTGCATCCGTGATCTCCTCTGTCTCCTGACTCACCTTTCTTTGTCACTCTTATTGCTCTACCTCGCTAGTTTCAATCTTGCT
CAACCTCCCTCTTTACCTTTCTATTTCCCCTCTATCATGTAATATAACTAAATTTGATTTGGGACATTTTTTTCTCCCCACCACACCTCCTATCCTCCTA
CTCCTCATCGGCTGCCCACAATTCCTCTCCCTTCATCACCTACGTATTATCTTATTTACGTCGCCCTTTCN
>LE_HBa0099K07_SP6_31596 (trimmed for quality and cloning vector)
AACTTTCACCTAAGTTTATAATTTCGTATATATATATATATATATATATATATATATATATATATTTTGTGTGTGTTTTATTCTATGAGAATGCTGCTTT
CTTCTACTTCCTCTGTCCATTTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.729285
Expected error %
1.5915
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099K07
Clone
Clone name
hba-99k7
LE_HBa0099K07
P099K07
Clone type
BAC
Contamination
none
Estimated length
82,065
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found