Clone Read LE_HBa0099O23_SP6_31820

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0099O23_SP6_31820
Primer
SP6
ID from Seq. Facility
LE_HBa_099_O23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
133 trimmed for vector and quality, 664 raw
Sequence
>LE_HBa0099O23_SP6_31820 (raw untrimmed)
GGGAAGGTAAAGGCCAAGCTTGTTAATTCGCCCTCCTCCCAATACGCAATAGGGGCCTAACGATTGCCACAGACTCCGAGCCAGACCTCACATTTAGAGA
ACTTAGCATACAACTCTCTATCTTTTAGAGTCTGGAGAACTATTTAAAATGACTAGCATGATCTTTTTCATTCCTCAAATAGATTAGTATGTCATCAATG
AATACGATAACAAACATATCTAAATAAGGCTTGAATACTCTATTTATAAGGTTCGTGAATGTTGCACTCACATTGGTCCACCAAATGAAATAACTTAAGA
ATTCATAATAGACCTTAATATGGTCTCAAAGTTTTTATTGGAATATCACACTCCACTAACCTTAGTGTTTGGTTACTCACATCCGAGCCTCATACACATG
TTAGACGCTTGCTTCGTCCAAAACTCCATCACTCTCTGGGCCGCACACTGCCCTAATGATAGCTAGCCTAATACCATGCCGGAGGTGTAAGAACATCACA
TCACAACATCTTACTTTAACTCCATATATATATTTCTCATTCTGGTTTATTCTTTCTAACACGCAGTACGACGCCGCGCGGCCAGGGTAGACAATCTACG
AAAAGCGAGCTGTGATACAAAGGAGGGAGCAAACCTATCGATACGGCGTCACGCTATCAGTATG
>LE_HBa0099O23_SP6_31820 (trimmed for quality and cloning vector)
CCAGACCTCACATTTAGAGAACTTAGCATACAACTCTCTATCTTTTAGAGTCTGGAGAACTATTTAAAATGACTAGCATGATCTTTTTCATTCCTCAAAT
AGATTAGTATGTCATCAATGAATACGATAACAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.909167
Expected error %
0.572226
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0099O23
Clone
Clone name
hba-99o23
LE_HBa0099O23
C03HBa0099O23
P099O23
Clone type
BAC
Contamination
none
Estimated length
188,231
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found