Clone Read LE_HBa0205J09_SP6_369076

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0205J09_SP6_369076
Primer
SP6
ID from Seq. Facility
LE_HBa_205_J09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
34 trimmed for vector and quality, 1011 raw
Sequence
>LE_HBa0205J09_SP6_369076 (raw untrimmed)
TTGGACAGTATACTGATGTCTTGGATGGAATCGTCTCTCATGTGGTTCCAGTGTAGATGGAAATATTCTGTTTCGCACAATAACATACCGCTACATCTCC
CTTCAATGACGCAGGAAACGCCAGCAACCTAATGATTTTCATAATTAGCTCTGTCCTGACCACATCAATTTTTCATACACACATCAGATTGTCTATGTGA
GCCTGTGG
AATACTGAGATGATTGCCATAAAAACGAACCCCTCGCGGTAAGTCATCTTCATGAAACTACTAGACACCAAGAAGGTGTGCCCATGGAGTAG
CAAAGGCAGGACTAGATGCTCATCAAAATGAGTAATGTTGATAGTGACCCAATAGAACTCTTGAGGTCGTCAGATGAGAGGTTGCATCCCCATAGAATTA
TGAGCCTTGTTATCCACAACCTCCTGATTGTGTGCATCAATACGTGGTGGAGGATGTGCTGTTAACCTATCACAAAGATTCATTAACTTTGCTGATTTTC
CATTCTTCATAGTGTACCATTATGTTAAAGGTTGAATAGAATTAGTGGTTCTCCTCAACTCTGTGTATGCGGAATAAACTACATCTAGACCTGAGAAACC
CTCGAATTGAAGAGACAGTAAAATCATAAAATCTTTGACTAAACTTCACCTAAGTTCTTAAGGATAATCTACCAGCCATTTTCGCTGGCAGCGGCGTCCA
AGTCTGATACTCTCCAATATACCGACCTAATGATGTAAAAGCCGACATATCTAGTACAGAACCCTCATTACTACGTTATGGTTGAGTCACAGAGAAAAAG
GGATTAGACTTTACATCGACGAAATACTATCTTCATTTACGCATGGTCTTTCCAAATTAACATGATTAAAGGGGAAGGTTTTTTAAGGAAAAGTCCTTTC
CAATCTCTCAGTGGAACCAATAACAACAGCTAAGAGTTGATTTCTTCTGAACTGTGGAACAAACTAGGCCGTAATTGCTCCCAGGGTTCAAAAAGCCTAC
CCGTATCAGGN
>LE_HBa0205J09_SP6_369076 (trimmed for quality and cloning vector)
AATACTGAGATGATTGCCATAAAAACGAACCCCT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.734957
Expected error %
0.786481
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0205J09
Clone
Clone name
hba-205j9
LE_HBa0205J09
P205J09
Clone type
BAC
Contamination
none
Estimated length
129,926
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found