Clone Read LE_HBa0209A01_SP6_371316

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0209A01_SP6_371316
Primer
SP6
ID from Seq. Facility
LE_HBa_209_A01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1344 raw
Sequence
>LE_HBa0209A01_SP6_371316 (raw untrimmed)
CGAAATGAGCCCTGAAACGATTTCTCACGCAACTTCTTTTATCTGGTATAACACCCTACCCGCCTCTACTGATTTATCCATCGAAACGAAACATACGAAC
CTTCGGTGGGAAGCAAAGAAAGAACTTAATTCTAAATATATATTATGTGGTGTCCCTTGCAGACCTAATTCATATGTCCAAGTTATTTCCGTAACCCATC
TAGAAAGAGAGTATGTTTACGTAAAATCTTCTCAACTTTCAGTACCAGCATGCGCCAATAGTAGTAGTGAGATCGATGAAAGGTTACGTATATAGTGTTA
AGCAGAAGTTCATAATATTTCCTATTATTCAAATTCTGCGTGTAGTAAAACTGTTGAACTACTTGTAGTCTCTTCCTTCACCATTTTATCTCCTTTAAAT
TACAATAGCCTTCTCATTTAAATCCTGATATCTATTGGATCAGTATTTGCTAAACTGCGAATAACTGTTAAAAAATAACTTTAATGATATCTAGTTTATA
TAATCATTCTTACCCCGGCTTTTTGTATTACAATCTATATAGCGTGTCCAAAATTTTGAAAAATATGCTCACCTATAGACTCAGTTTCCTCAATAATATA
TGTATATGCACTCGTATCACTTCAGTTGAATTTTTCCTAACAATCCTTTTAATGCTACCTAAGCATTTTCAATGAAATATACTTAGTCCGATAATTCATT
GATTATACTTGTTTAATAATCATTCTCTAATAACTTGTCATAATGAAGGAATCGATTTTACATAAAATGTTCTCCATAGTTCTCTATATTACTTAATTTG
TCAATTCGATAAACCATTCTTCTTCCTATAACTTCATGTTTCATACCAATCTAAATTTCACTACTGATAGGTCTCTTCAAAATCTCACTATGATTTACAA
TATCGCTAATAGTAATAGCTCCTCATCTTCTATAACTAAATAATTTTATCATACATACACTTGAAATCTGCATCGATCACATGCTGCCATACATCATAAA
TTACGTCAATAATTTATTTTTTAATACTCAAATTATCTTAAATTCTAAACAATGTCTAAATGCGATTACCTTTAGTGATCAAGTAATGCATCTATTGTAT
ACTCCACTAATAATCTTACATACCTTTATACATTCTTATTTTCGGTCAACTCACATATCCTGTCACTTGTGTCCTATATCACAAGACTTTTCCGCCTACC
ATCTATTGACAATATTTCACTTCTAACTGACGTTTAAGTATGAGTCTTCTCTATACTAATAGCGAGATTATACGTCTCTTTGGCTACTCTCTGCTATTCA
TTCCCATTAAATCTATTTCTGCGCAACGCTACTTAATATATATA
>LE_HBa0209A01_SP6_371316 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0209A01
Clone
Clone name
hba-209a1
LE_HBa0209A01
P209A01
Clone type
BAC
Contamination
none
Estimated length
88,038
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found