Clone Read LE_HBa0209F08_SP6_371570

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0209F08_SP6_371570
Primer
SP6
ID from Seq. Facility
LE_HBa_209_F08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 3023 raw
Sequence
>LE_HBa0209F08_SP6_371570 (raw untrimmed)
TAGACTATAGATATGCACTCTNACACCNTAACANTCATGCGATGACTACACGACTCTNCNANCACTCCATGTATGTTANCACACATTGCATAAGTCTAGA
CNTACTACACAAACTACTGCTACATTCTGATACCTGAGTGCACGAGACACACACTCTAACTCTGATATACTACACACCTCTGCTCTCTCATATACAGCTA
CTCTATATATATCTACATTCATACATACTCGACTCTATACGATAACAGANACTGTGTACTACATATACTATTCCACACACTTCACATACACTAGTATCAT
ACAATGCGCAGAGACATGTGCTACACTTATACACCATCTCACTTCACCTATCCACGCGCGTTTACCATACTCATATCGCACACCANCAATGTCACCACGT
AGCATACGGACATCTCATAAGAATATCTATACTTATACGTATATGTACTTAAGCACACATCTACAGTACAACNATGCGGATACATAGTGCGCACCTAACA
CACATCTGACGACAGCTGGTAACGCCTTCTTGACAGACAACACCTACTATCCACAATTCAAACACTGATCTAATTNCACATCGTCCGTACTACATACACT
ATTTCTCTCTAACNATCATACCAAATATGACTGATAACACCCATCATTGCACCACTCACTCTCAACATATCACGACTATGTATCACTACATATNCGCTCA
CAACTCTATACATTACAACACATCCTTCTCCTTACACTACGCTCTATCATACTGCACTTCTGATTCATATCAAATACTTACATACATCTACTNTNTGCTA
ATGTCATGTGACATGAATCATACATCATNATACTCGATCATACATCTGCTCTAATCATATACGATCTGCGAGTACACATGTACATACGACTACACTAATC
GACACTCACAACATCCATACACAGATGCGTACTGATCGACTATGCACCATACTCACCACTACAACGCATACTATATCACCATATGCNTTGACACGACTGT
AGCATAGANCTACTAGTCTATACATCTACTATAATACACTCATCATCATTCGATNCACTTTTACTATCAGTGACTCCATCACTCACAGACATGGTCGTGC
TCACGACACACTTGTCTCTTATACAATNCATACTCTCANTTTNGAATTCACATCAATATATTCTCGAGAGCTCACTGAATAAGNACACAACATGATTACC
TATNCACTACAGACGTTCTACATANCTCNCTCACATACATTCATCTCATAGCTTCGTATGTATACTNCACANTCTACTCTCATCACTAACACGCTCTAAA
TACTTTA
CTCTCTTTCTCAACAAATTCACACTTACAGCAGTACATCAAGTGACTATACAATAGCTCAACCCCTACACCACACTCATCACACAACACGTAC
ACTGTAATCACTGAGACCTACAGCAGCATACCATCTCCTACATTCATCTCATCACAGCACACATCAATCGTACACGTAGAACAGACTCTATCCTTATCCC
ACCTACACTATCTCGTTATCTCACTATCAGACACACTATCTATCAATCTGACACTCATCATCGTCGTTCCGAACATGTTATTACCTACAATACACACTAC
TACGACTACACTCGACTCNTNNCCACGATTCACTTGCATCATAACGTATGAGATCTATCTGACTATGCTCATACGCACACTANTACACTCATGCACTATG
TCGNCATGTTGCATCTATATAACACATCATACTAACTAATACAGCATAGTCACACACAGAGACATCTCACTATATCACTCTCATCGCTCTACTTACTGCC
ATCACACATCATATGCCACTATGAACATTACTGCACCATACTGTCNCACGACTACTCATACACGATTATATCATCGACAATCGAGCATACTCACTCATAC
TCTAACTACGTTCTCTACTTACACACTATAAAGTCTGCTCACAACGCATACATCATATCTCGTACTGCTCTCCTAGATCTACTGATCATTGATAGTATTC
ACAGCACACGACTTGTNANCAAAGNACACTCATTAGCAGGATGCACATCTCACATTCATGTCTGGAGTAATNTAATGAACAGTAATCAGAACTGGATAGA
TCAACATCATATACATATAACAGTCCATGCTGCACTCACGCATCTAGCACAGAGTCAACAATTTCAACCCACTCGCGATGATATATGCACGCACTAGAAT
ACTATTTAACATCTAAACCTCACTACTCTCACTAATCTATAACCTACAATACACCATACTAGAGTTATCACGCCTCATACATTCAACATAACACATATNA
GATACCCACACACTCCCTCTACATCACTCGGAGTTCATGTCATGCACTCATCTCACACATCACGATAACATAACTATAGACTCATCTGCGTAAGACAACT
ACTACAANCTACCAGTGATCTCAATTCATACACACAGCATGATATATACACCTCTATATGCTCATCACACTATACAATGCGATCACATCTAGGTATTACA
TACTGATGTCACACACAAACTAATCTATCGCTATACTGAAAACTATGAAACTATATACACTACTGATACAGTCTATATCACACCACCACTCATATGCCAT
ATATCANTGACTATNATACACATTCTGCGTCACTACATCATAAGTGAATCATCTCACATCAACATCGCTACAATTACTAGTACAAACACAGCACCAGCAC
TCATAACGACATCGATATGACATCACTCATATTTGCAACATATATCTATCGACCACATNTTGACTATTCGACCATAAACTCACCTACACTCATTAGCTAC
TAATTACTCCTACCACCATACTACTACGTATATGACTATGCAGAATATCCATGCTCGAAGTTACTATACATGCACAATTAATTACACATTACATGAACTA
CGCTATCTTATGAACCGAAACTCAGTGTAGATTCAACACTATTACTACTACAAACTACTAGCGTAACAATCATCAGCTCGCCATGATCTACTCAACTACA
AACTATAACTTACACTANCTCTC
>LE_HBa0209F08_SP6_371570 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.04304
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0209F08
Clone
Clone name
hba-209f8
LE_HBa0209F08
C06HBa0209F08
P209F08
Clone type
BAC
Contamination
none
Estimated length
109,890
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found