Clone Read LE_HBa0209L08_SP6_371858

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0209L08_SP6_371858
Primer
SP6
ID from Seq. Facility
LE_HBa_209_L08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 2032 raw
Sequence
>LE_HBa0209L08_SP6_371858 (raw untrimmed)
ACTCTCCTCGCGCTACCTATGCCTGTTTGACACATTCGAATCGCTATCCATCTATCACTTCAATCATGCGTGTAATAACCNCCTACACGCTCCCCTGCTT
GCCAAAGTCTTTGCATCAGCTATGTACTATCTTCATCACATCCTAATATTCACATAACTAGGAGCGTCAGCCTTGACTTCCACACCTTTCTCCTACATAT
ATGATCTCTGCAACTCATAATACACATTGTACACTTTCGAACACACCACACCGATCTCTAGCATCAAACTTACAGTAGGTATTTGTCTCTATTCTCACCT
TGTTTGCGCTCTCTTCATATACATTACCATTCAGTACCATCTACTGCATCTAGCTCAGATCCACACACCTACAATTATCATTGTAACAATACATTTGCTA
TCTACATCTGCATGACTTNTNATCCAACCATAAACAATCATGCTCTCTACCTGTAAAACATATGACGACATATCCTTACTACATATTCATTCTATAATAA
CTTCGCACAGACAAACAAATACCTGACTACAATATCAACATCACATATTCACTCCTTCTTGATCACTACTCCTTCGATCAAAAACTACCAATACCATCTC
CCCCACTCCTTCACACTCCGTCAAACCCGATATACAGTAAAGATGTCTTGCCATCCACATACACCAGCCGATCATCAATACTACCC
TCCCTATATTAACA
ACTTCTCCCTTTCCCACACTTCAAAACTCCCTCCTAATGCACGCTACCATCCATACTACTCATACATGATTAAACACACATTAACGCCTGTTCTCTGCAT
CTTTCAACACACTGTTCGTCAACTCCCCATACCTACACTCTATCATAGTACCACCACCAATCTGACTCGACTACACTCTCCTTATCGTATGCTTCCTTGC
AAACAACGAATGCAGCTATCTGCAAAAACTCAATACTGATCCATACCCTTCTCAATGATCTGTTCTTGTGATACTACTACCTCCTGTCTACCCTCTTCCT
GACCNATCACTTATNCATCTACTATACCTCTGTCAATTCGCAGCCACACACTTCTATCTAATCATGGGTCTATTATGCTATGTTATCACAATCATAATTT
ATAAATCTATACTCCCAATTCTGNCCAAAGCATAGCACGTATCATCTCACATAACCAGCAACTGCATCACTCTACACTACAAATCATAACATTCTAAGCA
TCTCTAACACACAACAATCATGAGTCTACCAATTCATATATCCAAGCTATATTATATACATAATATGCACTCAATATCCATACTGATATCAACATTCTAC
CATGCACGAGATATATGACCAACTAATATANCATTTTCCTCATACTACATCTGTACTACATCATCACAGACAGCATGTCATATAGACACACCTCAACTAC
ATCATCACTTTCTCACCATCCATCACTATATTCCGTGATATCCACTATCTAGATCAACTATCATCTCATCACTACCTGCGCCAATCACANCTCTGCACAT
CTAACTATATATTCACTACGTTCCNAACACTCAACCACAATACCCTGATTCCTATATATGAGATACGTACTCGACTATACNTATACGTNCTATGAGTATC
CACACNAAATATTATCATCNATCTCATCATCATAACTATGCGATATATACTCATATGTACTTAATACATATGATCTCACTCACTATACCCTTACNACACG
ACAATCACTATCATTCTCGATCCATGTATATACNAGCTACCGCAGAGTANATGAGTCATTAACGTAACACCTACTCATTCACGACATACTCGATNCATGA
TCTATCATGTACNGTCCATGCACTCTCGTCATCGCACACGTGACTCATCTCGATTGCACTACGTCATANATACACTCTACTATGTCACACCANCCATACA
GCGACTCACGANACGCGTGAGACTGNATACTACGCTACCACANTGTCAACNCGCGTCACCTCCACATCATATCTGTCACTCTATAACATGNCACTANTCA
TAGCACTTCTATCAAACATACATAACTATGCG
>LE_HBa0209L08_SP6_371858 (trimmed for quality and cloning vector)
TCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.650993
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0209L08
Clone
Clone name
hba-209l8
LE_HBa0209L08
P209L08
Clone type
BAC
Contamination
none
Estimated length
103,251
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found