Clone Read LE_HBa0209P10_SP6_372054

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0209P10_SP6_372054
Primer
SP6
ID from Seq. Facility
LE_HBa_209_P10-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 2394 raw
Sequence
>LE_HBa0209P10_SP6_372054 (raw untrimmed)
AAGGTCCAACCTAACTACTTCACACACCATAAACACTCAATTATCTCACATACCAAATTTCAACGCTCCCACATCCCACTCCCCCTACTATAACCTACCA
TTACACACCCCCTATTAATCTTCTTCCGATTCATACTCAATCTTTCTTTTACCATCCTTTACTTCACTCTTACATCCATCACC
CTAATTTCTAAAAGGTA
TCATTTTCTATTAAAATGTGTCACCACCAACCTCACCTTTAACATTCCAATTCTACTACATACAATTCATACATCTCTATCTTCACTTTCTTCTCAAACT
CATCAATCATTTTCTACATTCTTCTCACACCTCTATAACTCAGACAGCACTACATTAATCTCTATTAACTAACACATTATATCTCATCATATTTTTACCA
AATCCTCTCATCCCTAATGATCTATATTCTCTCACTTCCACCATTATATATACTGCATAATAAAACCTCCCATCATACTACAATCACACAATACGACACA
CATTCTATCTCATCTCCCTCCACTCTCTACACTATCCTCTTCTCCATACTTAGATCCTTCTCTATCTACCTTAACTAATCATCAACATCTAATTCCCACA
TATCATCTTACCCTCTCTATTATACTGATTCCTAATTTCGTACTCTCATTCATCCTCTTACATCACCACACATCTATTTACACCCATCTCCCATCTTAAT
CCATCACATACCATTACCCTCACCATCAACATATACAGAGACTCCTATATACTACAACTCACTATACCTACTTTCATCATACCACAAACACACTCCAACA
TATCCAGCTCACTCATATCCATATCTCCACTCACTTTATTATATAATAACAAAAATAAATTCATACTGAACTTCTACTCACTATCAATCTTCCACTCCAC
AAAATATTCACCTCATAAATCCACATATACATAATCATAATCAACTCCCAAATATAACAACATTACCAACTCCAACACTATTCTACTATTATCCTCCACT
CTTATTCTATATCACCATTCACACTCTCATACTCACACCCTATACTATCCAACTTCATCATGACCTCACACATTTAACAATTACTCCCATCATCTCAACT
CCACTTACTCCAACAATCCTCCCACCAACTCACACTATTAAGCATATGAATCAAGCTTCACCTATCTCTACCACACAATCTCATCTACCTCTTCAAACAC
ACAATACAATATCAAACTCTCCGCACTTTCCATTCATACTACTCACATACCATTCACTATCTATTCCCTAATGCTACACATCTAATATATCACCGCTCAT
CACCTTTCACTATCACACATCACTCTATCTTCTATCTCACACCACAATCAAACACTCTCATCTCTACACCTTTATCCACAATTAGAATCACATCTCTATC
TTCCACTAACACAACTCCACATATCAAGTACATTCGCACAGCCTCTGAACAGAATAACATTACTCACTCCTATGCATTAATAACATCCTTAACCAGAAAA
TCACATTCAANCAGAATATCATATCTCATCATCAATATCTGCTTCTACCATATTTACACTCTACTCAAGTACAACTACCGTCATCACATCGTCTCACAGA
TCATACACATAATACACTATAACACTACTATTGATTCATACATTCCTCATACATACACATATACATACTACTATCTTACTTCATCTCAACCATAAACTCA
CTACCTCCACCTACTACATATCCATTNCAACTATAACATACAAGCACCACTTTACTATCATAATTTGACATCATACTCTACTACATACTACATCAATNCN
CATGTCTACCATCTCAACNCACGCTACTCATNTCCATCCTTATATCACTATNAATATATCTCCAACAATCTCGTNCATATACTTCTACTACACATACTCT
CAACACTCCATCTATTCTTACAACATCATAANTATTCACATATTCTCACTACTAACACCACTCTCATACTGCATATAACACTATCTCNGCCGCATATCNA
TTCTCACACACATCTTCACACTATCTAAATCACTACTCATTCTCAGACCATCTATCNCTCTAATCNCTATACACACACTCTACGCATATCATACATCAGA
TCTCTACTAAACACATCNACTGACACACATCACGCAACCATATATCATCTCACATATCATGCGACTTGCATCACATCACTCCTGAACGCACACATAATAC
ACTCCATATCATATATCATCCGTACCTAAACTATCATCATATAGCTCTTATACCGTTCATAACACTCTTCCTCATAACTCTACTGACTCTATCTCTCAAG
TATCTTCACTACAACANCAATCATCTCTACATCACTACCTAAACNATGATAATTCGACAAAGATACATACTATCACACACNCNCACTAACTATC
>LE_HBa0209P10_SP6_372054 (trimmed for quality and cloning vector)
CTAA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for contaminants
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.79219
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0209P10
Clone
Clone name
hba-209p10
LE_HBa0209P10
P209P10
Clone type
BAC
Contamination
none
Estimated length
65,151
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found