Clone Read LE_HBa0211D23_SP6_372656

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0211D23_SP6_372656
Primer
SP6
ID from Seq. Facility
LE_HBa_211_D23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
47 trimmed for vector and quality, 894 raw
Sequence
>LE_HBa0211D23_SP6_372656 (raw untrimmed)
NNCCGTACCCTCATTGTAGGAATTATTTTTAGCCTGAAGAGGGTATGAAATCTGAGTAACGGATTACGCACTTAATGCCGTTTTCCTTTGTTTGATCCTT
CCTTTAAGACCTTATTGAGGTGAGCCACAGGAGGTAGCGGCCAATGTGATTTTCCTACCTGATACTGGCGGTTAATCTTGAGCCCGGACTTATGAACGAT
GATGTCCCCTTGGGATACGTTCCTGAATTACTGATCCTTTTCGTCTCTCAATTCTACCGGGAAAATCCTGTTCAATAAGGTCTCACTATTGCCATCCCTT
GTAATATAGAATTACATCAACATCCCGAATTTCCTTCCACTGAGCGTGCCAGATATGAACAACTTCTTATCTTCATGCATGATGCAGACTCTATCCGATT
CATTCCAAGAGACCTGCATCACCTCAAAGAT
CTTCTTGATCTCATCTTAAAAATTCTGGGGATCCTCATTAGTTTGCAAACTGGATAACTCTGGAATAAT
CATCCTAACAAAGTTAGGGACCCTTGCTGCTGCAAATCCGCCAATAACTTCCAGATGAGCTTGAACCTGATTAGTCTAGCTGGCTATACTTTGAGCAAAC
ATTTTAATGGCGTATCTGAATTCAGCATTGCAGACTTCCTTATTTGTCACTGAGGACATGCGTTTGCATTTCTGGTCTTCGCACTCCGAGCGTTACCTCT
ACGATGAGGAATGATCCATAATGTAAAACCCCTAGTGCGAACGGCATCAGACCCTACCTTTACAACTATCAGCCTAACTCCACAGTGCAGATTTTTTTTT
AACACTTCCTACTCCACCTTTTTTATATAGCGCGCCCGCCCTTTTATTCAAATGAAGACCGATTCCCATTTGGCTGTCCCTTCTCCCATCCTTT
>LE_HBa0211D23_SP6_372656 (trimmed for quality and cloning vector)
CTTCTTGATCTCATCTTAAAAATTCTGGGGATCCTCATTAGTTTGCA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.823666
Expected error %
1.54234
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0211D23
Clone
Clone name
hba-211d23
LE_HBa0211D23
C08HBa0211D23
P211D23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found