Clone Read LE_HBa0213P18_SP6_374758

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0213P18_SP6_374758
Primer
SP6
ID from Seq. Facility
LE_HBa_213_P18-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
80 trimmed for vector and quality, 917 raw
Sequence
>LE_HBa0213P18_SP6_374758 (raw untrimmed)
GGAGAGACTGTCCAGAAGGCACCAGGGCCACACATTGTTCCCAAGAAGATCCCCTTTGGGTGAGAATAATAATTTGTTTTAAGGCTCAAATCCTCTTTTT
GAATGCGAGATTAACT
TCATTTTTTTTAATTTCGAACAAATGCGTATGATCTTTCCTAATTGTTCATTCTGGAGTACTTTTAGGAAGACTAACCAGGGTA
GGTCTAGCTTAGTCTCAATGGTGGATCCTTCGAATTTTCGTCAAACTCACTTGACATACGTTACATTGCCAGATTATTAGACACCTAGGTCGAGTCTGAG
ATTCAAGGTCATGCAGTATAGTATCTCTATGGCATGGGTAGGGCCTGACACTTATCAATTACTATGGCTAGTGCTTGCATTGATTTTCATAGCATGAGAT
AATATTTGTGTGATCCATCCTGCTTCGGAGTTCTGCTATGTACACATAATATGCTGTGGTATTTTTACATTAAAATGTATAAGTCTTTTTGTTAAAATAG
GTTGCTAGCAAGAAAACCCCTTAATATGATCCTTTATTTAGGCTTACTCAACTTCTCTATAATCATTCATTTTCAATTTAACCCACCCCATCAAAAATTT
TTGCTTTTATCTCCCATGTTGTATAAAATACTCTACTTCCTAGATGGTTCTCTGGTACCCAACTTGTATGATGCTATTGTCCCTCGATTCTTATTCTTGG
GCTGTTTGTTTACCCTATATACCTCCTTCCTTTCTATTAGCATCACCTCAGATGTTTCTTATTGACCACACTACTATTTATATTGTGCTTTTTGTTACCA
TCATGCTAGACTTCGATACTAGAATGTCTACTTATTTTTTAATTCTCTACTTTTACTTTTATTCTCCTTTCATGTTTTATTTTTTGCTTTCTTTACACAT
TGATTCTTTAGGCCCCA
>LE_HBa0213P18_SP6_374758 (trimmed for quality and cloning vector)
TCATTTTTTTTAATTTCGAACAAATGCGTATGATCTTTCCTAATTGTTCATTCTGGAGTACTTTTAGGAAGACTAACCAG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.865704
Expected error %
1.20973
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0213P18
Clone
Clone name
hba-213p18
LE_HBa0213P18
P213P18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found