Clone Read LE_HBa0244N05_SP6_379628

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0244N05_SP6_379628
Primer
SP6
ID from Seq. Facility
LE_HBa_244_N05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 926 raw
Sequence
>LE_HBa0244N05_SP6_379628 (raw untrimmed)
NCCTCGCATGGCCCGAGTTCGATGCCGAGACTCCATTGTAAAGGGAGTCGTATTTCATCATACGGGTTTCTATTACACTTTGACTCTTATGGATAACCTG
AGTTTACAGATAATGAGTCTCTTCTTGAATTAGAGGGATAACAGTGAAGCTTTGAATGTGTCTTCGTTGCCTTTGTTCGTATCCTGAAGATGATGTGAAT
GCGGGTATTCTTTACACGATACTGTTCTTCGTCTCCATGATAATAGTAGCTCCTTTGCGCGTCTCTAAAAAATTATTTCCTGTGCATGTGGATGGTGATC
TGCTTTTGACTTCATGAGACTGTCATATGATGTGATTCTCAA
ATATTAGCTGAATGCCGGAGCTGCATGGTTATGACTAAGATGTGTCTGAATCTCCTCC
CTTAATAGTGTTGAATCTGGCTTGTACATATTAATGCGGATAAATTTATGGGATGGTTTCAGCTTGGAGATTAGCTTAGCACCTAAGTGTAATCACTCTT
GATGACATCGACTCAGATCCACCATCATGAAAGCCGGATCATTACCTTTAAAGACAAGTGGTTCGATTACATTTCCCTAATATCTTGTTACAAAGCCTCA
AGTGAAAGACTTCAAGAGCAAATTGAAGATTATAACTTGAACACATGTCCTGTCATGATACAATATCCAAGCCCGAAACCTTGTAGTCACATTATTAGAG
ATGCTAAATCTGAATATTTTTCTCTAAATCAAAGACTAGTAGTGGGTCGTTTGGTAGAGTGTAGAAAAATAATGGCTTTAATAGTGCTTGCCATAAATAA
TACCTGGCTCTATCTAAGCAAGCATTATTTTCTATGCATTGACTGGTTTGAAGTATTAAACAAAACAAATCTTGCCAAATTTTCGGTTTAAACTTTATGT
TTAGGGAAACTACCCTTTCCCCATTA
>LE_HBa0244N05_SP6_379628 (trimmed for quality and cloning vector)
ATAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.69683
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0244N05
Clone
Clone name
hba-244n5
LE_HBa0244N05
P244N05
Clone type
BAC
Contamination
none
Estimated length
111,367
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found