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Clone Read LE_HBa0114B14_SP6_38090

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114B14_SP6_38090
Primer
SP6
ID from Seq. Facility
LE_HBa_114_B14-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1408 raw
Sequence
>LE_HBa0114B14_SP6_38090 (raw untrimmed)
TCCTTCTCTACNTCTAAGAACTCTCCCATTTTCTTAAGGGTGGCACTCACACACACATCATCGCAGTATATGATCACATATACGGACATATATGTGTGAG
TGTCTCTCGTCTGTATATGANGGAAGAGTCAGATCTATCACTCTCACGCTATGTGGCGCGGATATTGGTATGATCTNCGCNTAGTACACATCTCTTCANA
NTCCATCAAGTTCGCGCACATGAAACATCTCGGACTAGACTAGAGTCTCTCGTAGCCAGCTCCGAGAAAGTATCATTCACGCTGAGGTGTATATGATGTG
GTACGTCTACTGAAGCGAACTTAAGAGTGTGTTGCGTNTNTCACGCAGCAGTGACTAGACGCTATATATTAGTACACGTAGCAA
TGTCAATATCGTGATA
GAACNAGTTGGGTGATCACAGATCACTTNTTGTGTGGAGGATAGTCTAGCATACGCAGGGAAGCTTNTACGTNACAGAGCAGTCAGCTCATGTGTACATG
TCTAGACTCACAGTCGTGGATATCTTNAGTCTACCTCACTCGTATGTCAGTGTCCTTAAGTGAGAGAGAGACTCTGAGCTTCTCACGCAATGACGCTTGA
GCTGAGCCTGCGGCGAGCTGCGACGATATGGCAGTATATTACACACGACACACCTGTCTATTGTCGGCGACCGCTCATAGTATCTATATGGGAGCATACT
GTCATCGGCGCCGGCCTTGCGCGGTCTCACTCGAAGATGTACTCGAGTGATGACTGATGTCTAATGTGATATTCATCCTTCTTTGTAGAATGTAGTTATC
AGCAGCTGGTATNTGCCTTCGTATGCGACTGCGTAGCGTACGCATAAACTGTCCACTCCGTACCTGTCTGAGACACGACTGGTTGACTCATGTCACTCGG
CGATAGGCGTACGCGCTGCATACGAGCAGCAACTGCCGTTCCTCAGTGCGCGGCTCCGCCTTACTATGCCATATTGCGTCTATACCTAACTATGGTATCT
CTTGCTACGCGTTGCTACGCACTTTATCCTCTCCATGCTCCACTGCTAACAGCCTGCTGCNGACATACACATAGCGTCTGCTACTCATACTTCGGCCATA
ATCATTTAATCACTTCACACGCTTACTACTGTACCATCGCCGTCGATCGGTGCACGTACCTATCTTGATCTACTCGCGCGTGTCACCTAAGTATGAAGAT
GAGCCGTACGCGCATCGACACCTGTAGCCAGTACAGAACGATACAACAGAGCAATACGCCATCGAGTATCGCTGATGACAGAATAGTNGATGCGTATGAC
ACACGCTGCTGTCGTGTACATCGCTCCATCATGATGGNTGATATGGTCGCTGTGACTATCAACTATTTCGTATGCTGTCACGAAGAGCCTGTTGTAGACG
ACTGNAAN
>LE_HBa0114B14_SP6_38090 (trimmed for quality and cloning vector)
TG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.31548
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114B14
Clone
Clone name
hba-114b14
LE_HBa0114B14
C03HBa0114B14
P114B14
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found