Clone Read LE_HBa0245N21_SP6_381266

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0245N21_SP6_381266
Primer
SP6
ID from Seq. Facility
LE_HBa_245_N21-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 865 raw
Sequence
>LE_HBa0245N21_SP6_381266 (raw untrimmed)
TAGAGGATCCCGGGTACCGAGCTCGAATTCGCCCTATAGTGAGCCGTATTACAATTCACTGGGCCGTCGTTTTACAACGTGCGTGACCGTGAAAACCACT
GGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCA
GCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGA
TGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGAACCCCTTGCGGCCGCATCGAACATAACTTCGTATATTGTATGCTATACGA
AGTTATTAGCGATGAGCTCGGACTTCCATTGTACATTCTACTGTACAAAACAGAGAAAGGAAACGACAGAAGCCAATTAGCTCGCTAAAAAACATGTGAC
GTTTCTTTTCCGACCCCACGGCCATTTAAAATATACTCTTATATTTTATGACTAATAATAACCGTAATCACTTTTACTTAAATTAATTTCTTTTTAATTA
AAATCATCTCAGTTCTCTCCTCTTTTACTTGTTCCTCTATCTTATATTATATATTTAAGTTTTTTTATTTATTTATCATCTATCCTTAATTATACATGTT
AAACCCTCATTTAAATTGATACTATCATCTTTCTTATATTTGACTTTTCTTTAAATCTAACTTCCTGTCTATTAACCATCAATAACTATGTCCTCTAGAT
AATTAGCTTATCCTGTTTCCCTTTTACTCCCATCTTAACTATTTTTTCTATATCTCTTCTATATC
>LE_HBa0245N21_SP6_381266 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
3' read, no insert found (only flanking vectors)
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0245N21
Clone
Clone name
hba-245n21
LE_HBa0245N21
C01HBa0245N21
P245N21
Clone type
BAC
Contamination
none
Estimated length
111,634
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found