Clone Read LE_HBa0220K08_SP6_384968

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0220K08_SP6_384968
Primer
SP6
ID from Seq. Facility
LE_HBa_220_K08-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 999 raw
Sequence
>LE_HBa0220K08_SP6_384968 (raw untrimmed)
GTTTNACCATTAGCAGCNGGTACCGGTCCGGATTCCGGGATGAGAGACTGGACGCGGCGTGTGTGTGTCCGCTCTCTCTGACTCCATGGCCTCGCCATAT
TCATCTTTATAACTTGTGAAAGTCCACCCGAGAAACCACGACTTTGGGCTCATACATATTGAGAACCACTCGTCGCAACAACTGACTTCAAAAAATCGCA
ACTTTACCGATTTTCTTTTGTGAAAAACAACTATCCGTGTCCAGACCAACATTTTATGGTTGCACTTACTGAGCATTTTGATAAAGTCTCAAAATGGCTG
ATCTCATGACCCGCCTCTCCTACGATTACGAGCACATTCTAGAAAATTAAACTGATACCAGGGTCACAGGATGGTCCATAATGTCTAGTCCATTGCCAGA
CACCGTGCTTTTGTACTATTTTATGCATACTTTTCGACAGTTCTTACACCCCGGATTATGGATGATACGAAACTATGATCTGTAACAACCACTTGACTTT
TTTATGATCTGGTTCAAACATCTCTTCGGCGCGAGTATATTTCTGAATTACCTGATGAACATCTAGTCGGTTGAACTAATCTTTCAGTGCCTATCTGTCG
ACTACTCTAACAACATCATGGTGCTAATGATATTGAGAACCTGCTGGTGGTACTACCTTTCGATAATCACATAATTTTTCGACACTCTATTCTTCATTTT
GCGGATGAAAAATTAACAAAGCTCCTTTCTCCAAAACATCTTCCAAGTTTGCTTGCCAAATTACCGGCCGGATGGGGATTAAATTCCTTCCCGGGTGGAA
AGAAAAATGTTCCTTCACCTTTAAAAGCCCATTCTATGCCCCTCTTCACTGATTTACTACTCCACAGTTGGTGGATATTGGGTCCCCGGTTCCTTAAAAT
CCCTTTTGACGGTAAAAATACCGTAAACCCGTTTCCAGATGGCCCCAAATTTTGCCCAATTTTTACTCCCATTTTTCCCGCAACTTTTTTATAAATTGG
>LE_HBa0220K08_SP6_384968 (trimmed for quality and cloning vector)
CCGGGAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.67134
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0220K08
Clone
Clone name
hba-220k8
LE_HBa0220K08
P220K08
Clone type
BAC
Contamination
none
Estimated length
111,217
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found