Clone Read LE_HBa0220K08_T7_384970

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0220K08_T7_384970
Primer
T7
ID from Seq. Facility
LE_HBa_220_K08-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
50 trimmed for vector and quality, 957 raw
Sequence
>LE_HBa0220K08_T7_384970 (raw untrimmed)
GGGAACTCTAGAGCGGCCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAACGCTGGGTTTTTTTTTATTTCTCAAGAGACGTACGTGTT
CACGAAAATTCCATCCAACGTTTAATGTCTTTGAAGTTCTTTAACGTATGAGAAACACAGGTTAACTAACTCTCGTGGTTCCCGTGTGGCACCTTCGAAT
AACCTCTCTTATTTGCTCTCGCACTAAGAATCTCCCTATTAGGACATATAACTGCAACTCCCCGGACAAGAACCTTCCGATTGTTCTTACTGACTCATAG
GAAAACGTCCTTAAGTTCCATACACCATGTGCCTTACAAGGGCGCCACTTTCATGTTAACCTCACCCTAAGAAACCTTGTTAAAAGTCATGCGCTCCAGG
GGGATGTTATGCAAAAAGGTAGCCACTTTACCCAATGAAAAATGGTGCCTGCCGCCTTTATGGCTTTTTGAAATCATTTTCTAAAAACAAACCTATTTTT
TTGCCCTGAGAGTCTTCATTTTGACGACATATCTTACACCGACCCAACTATAAGCCTTCAATTAAACAAAACTCCAGTCCTTTTCAGCCCCCTGCAATTT
AAACCTCGTTGTTCTCCATCTAGCTTCGCACTCATACGATTTGCCTCACAAGACCCTTTGTCCGGTCCTTCCAACATCAAAATTTGTACTAAACCGGACA
ACCCCTTTTTTCATGTTACCATTTTGTTAAATTGCCCGCACCTGTCCGACCTTTGAAACCGGTTCGATTTGGCAGGTTTTCAACCGGTCCTGTCCCGGGT
TGCACGCCACCCCATTTCGCCTTGTCCCGCCTTTTAGTTTCGTCCCCCTTACCCTTGGGAATCATTGGGATACCGGGATAAAAAAAATTCCCCCCCCCCT
AAACGACCCCAATACAAAAGGTTCTTCCGGTTTACTTCCCCCGGGGGAAAAAACCAG
>LE_HBa0220K08_T7_384970 (trimmed for quality and cloning vector)
ACTCTAGAGCGGCCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.480964
Expected error %
0.609312
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0220K08
Clone
Clone name
hba-220k8
LE_HBa0220K08
P220K08
Clone type
BAC
Contamination
none
Estimated length
111,217
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found